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The map label for this gene is 114797482

Identifier: 114797482

GI number: 114797482

Start: 1740863

End: 1741699

Strand: Direct

Name: 114797482

Synonym: HNE_1698

Alternate gene names: NA

Gene position: 1740863-1741699 (Clockwise)

Preceding gene: 114799808

Following gene: 114798155

Centisome position: 46.99

GC content: 51.85

Gene sequence:

>837_bases
TTGATCATGGCAAGCTCCGGAACAGGTACTTTTGGGTTCGCGAACCCGCGGCAAAGGTTTTGCGCCTGGCCTGTAACCTT
TTGCTTTGAAACGCGAAGGAACCTTCAAGGACGCTGGTCTGGTGAAGGGCTCGTGACTGCAATCATGCTGTTTGTGCAAG
AAGGTGGAAGTTTCGACGTCCATCTTTCGCTGCGAGAGACCAGGCCGAAATGTCGGCCTGTGCCTGTTGCAACAATCAGC
ACTGCGATACGGTCAGAAAATCAGAGGATTGAGGCGTGCGGGCGAATGAACCGATATGAACCTGAATTGCACGCACTGAT
GATGAAAAGCCTCGCCGGGGAAGAGTTTTCCTACAATGCGCTTCTCACCAAGTTGAGCAGCCTTTTTCGCTCGTTCTTTC
GTCACAAGTTATTTGGCCACGATGAAGCAGCGGTCGAGGACCTTGTCCAGCAGACGCTGCTGGCAATTCACTTGAACAGG
CACCGATATGATCCCGGTCGTCCCTTCACAGCTTGGGTCTATGCTATTGCTCGTTATAAAATGATGGATCATTTCAGGCG
TCAGCCAGCTGGCCGGGTATTTGTTCCGGTGGATGATGTTGAGGGCCTCTTCTCCGCCGAGACTGCGGATCATTCAGACT
CCAGTCGCGACATCGAAACGTTGCTAACGCAACTGCCGGAGAAGCAAGGCGGAGCAATCAGGCTCGTGAAGTTGGAGCAG
CTATCGGTTCAGGAGGCGTCAGAAAGAATGGGTATTTCCGAAGCGGATATCAAAGTCAGCATTCACCGTGGACTAAAGAA
ACTCATGTCACTTGTTTCAAAGGAAAAGTTGCCGTGA

Upstream 100 bases:

>100_bases
TTTGGCTGGTTGGATGCAGACTGACTGCCAGTCTGTCCTTTTGAATTCGAAGGACTGAGCCGATTGGTTACACTCTTTCT
GGAAAAAGGCCCTGTATCGC

Downstream 100 bases:

>100_bases
CAACCGACGATCTCGTAGCAGACCTTTCCCGCGGACTATCCGCGGTTCGCCCTTCGAGACATCGTCTGCGCCTGGCGGTG
GCGGCGGTCGCAGGTTTGGC

Product: sigma-70 region 2

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma Factor Protein; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Q Factor; Extracytoplasmic Function AlteRNAtive Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH; RNA Polymerase Sigma Subunit; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MIMASSGTGTFGFANPRQRFCAWPVTFCFETRRNLQGRWSGEGLVTAIMLFVQEGGSFDVHLSLRETRPKCRPVPVATIS
TAIRSENQRIEACGRMNRYEPELHALMMKSLAGEEFSYNALLTKLSSLFRSFFRHKLFGHDEAAVEDLVQQTLLAIHLNR
HRYDPGRPFTAWVYAIARYKMMDHFRRQPAGRVFVPVDDVEGLFSAETADHSDSSRDIETLLTQLPEKQGGAIRLVKLEQ
LSVQEASERMGISEADIKVSIHRGLKKLMSLVSKEKLP

Sequences:

>Translated_278_residues
MIMASSGTGTFGFANPRQRFCAWPVTFCFETRRNLQGRWSGEGLVTAIMLFVQEGGSFDVHLSLRETRPKCRPVPVATIS
TAIRSENQRIEACGRMNRYEPELHALMMKSLAGEEFSYNALLTKLSSLFRSFFRHKLFGHDEAAVEDLVQQTLLAIHLNR
HRYDPGRPFTAWVYAIARYKMMDHFRRQPAGRVFVPVDDVEGLFSAETADHSDSSRDIETLLTQLPEKQGGAIRLVKLEQ
LSVQEASERMGISEADIKVSIHRGLKKLMSLVSKEKLP
>Mature_278_residues
MIMASSGTGTFGFANPRQRFCAWPVTFCFETRRNLQGRWSGEGLVTAIMLFVQEGGSFDVHLSLRETRPKCRPVPVATIS
TAIRSENQRIEACGRMNRYEPELHALMMKSLAGEEFSYNALLTKLSSLFRSFFRHKLFGHDEAAVEDLVQQTLLAIHLNR
HRYDPGRPFTAWVYAIARYKMMDHFRRQPAGRVFVPVDDVEGLFSAETADHSDSSRDIETLLTQLPEKQGGAIRLVKLEQ
LSVQEASERMGISEADIKVSIHRGLKKLMSLVSKEKLP

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31520; Mature: 31520

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMASSGTGTFGFANPRQRFCAWPVTFCFETRRNLQGRWSGEGLVTAIMLFVQEGGSFDV
CEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEE
HLSLRETRPKCRPVPVATISTAIRSENQRIEACGRMNRYEPELHALMMKSLAGEEFSYNA
EEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHH
LLTKLSSLFRSFFRHKLFGHDEAAVEDLVQQTLLAIHLNRHRYDPGRPFTAWVYAIARYK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
MMDHFRRQPAGRVFVPVDDVEGLFSAETADHSDSSRDIETLLTQLPEKQGGAIRLVKLEQ
HHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEHH
LSVQEASERMGISEADIKVSIHRGLKKLMSLVSKEKLP
HHHHHHHHHCCCCHHHEEEHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIMASSGTGTFGFANPRQRFCAWPVTFCFETRRNLQGRWSGEGLVTAIMLFVQEGGSFDV
CEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEE
HLSLRETRPKCRPVPVATISTAIRSENQRIEACGRMNRYEPELHALMMKSLAGEEFSYNA
EEEECCCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHH
LLTKLSSLFRSFFRHKLFGHDEAAVEDLVQQTLLAIHLNRHRYDPGRPFTAWVYAIARYK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
MMDHFRRQPAGRVFVPVDDVEGLFSAETADHSDSSRDIETLLTQLPEKQGGAIRLVKLEQ
HHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEEEHH
LSVQEASERMGISEADIKVSIHRGLKKLMSLVSKEKLP
HHHHHHHHHCCCCHHHEEEHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA