| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is wapA [H]
Identifier: 114797446
GI number: 114797446
Start: 2669587
End: 2672052
Strand: Direct
Name: wapA [H]
Synonym: HNE_2526
Alternate gene names: 114797446
Gene position: 2669587-2672052 (Clockwise)
Preceding gene: 114800008
Following gene: 114797437
Centisome position: 72.05
GC content: 53.69
Gene sequence:
>2466_bases ATGATAGCCGGAACCTGCGGGGCCATTGCCAGCGCTCAAGCTTCGCCCGGGGCCTACACTACGGGATATCGATACAATCT TGCAGGAAATCTGACCGGCGTCATTCGTCCTGATCCGGACGGGGCGGGACCAAACAAATATCTCGCGGAGCGCTATTCAT ACGATTCCAACGGCATGTGGGTCAGCGTTGAATTCGGCGAACTGTCTACGTGGCAATCTGAGGCTATCGCTCCTTCAGCA TGGGGAAGTGTTTTCACGGTCTTCCGTGCTGAAAACGCGTCCTACGACACCTTAGGTCTCCAGGCAAAGACTACAATTAC CTCCGGCGGCGCCACTCTCAAGGTAACGCAATTCAGCCATGATGAAGACAGGCGGCTTGAATGCCAAGCTTTGCGAATGA ACCCTGCCGTGTTCAGCAGCCTTCCCGTAAGCGCCTGTTCATTGGGGCTTTCAGGGGCGCATGGGCCTGATCGGATCACA AGAAACGTTTATGACGCAGCCGGGCGGATTTTGAAGACCCAGAAGGCGTATGGGACGCCCCTTCAGCAAGATTATGCAAC GTACACCTACAGTCTAAACGGTCAATCGGCCAGCGTTGCAGACGCGAAGGGCAACAGATCAGCTTTTGTATATGACGGCC GTGATAGGCTGCAGCGCTGGGAGTTTCCGTCCAAGACTACACCAGGTCAGACTAATACAGCCGACTACGAATTATACGAA TACGATCCTGCGGGAAATCGGACCTCGCTGCGAAAGCGGGATGGTCAGACGATTTCATTTACCTTTGATGCGCTCAATCG GCTATCGAATAAAAACGTGCCGGGGACTGTCGGCGATGTTCATTATGGATATGATCTCAGGGGCCTGCTTCTCTATGAGC GCTTTGGATCGGTCGCGGGGCAAGGGATAACGACAGTTTATGATGGTCTAGGACGAGCAACAAGTTCGTCAACCAATCTT GGAGGCGTGGCGCTCATCCTGTCGTACCAGTACGATGCGAATGGAAACCGTAGCCGGATTACTCATCCCGATACCAGCTT CTTCACTTACACGTTTGACGGCATGGACCGAGTTGTTACTATTCATGAGGGGGGTGGGACTCAGGTGCTCGCTATCGGTT ACGACGAGCAGGGGCGGCGTAAAACGCTTGTTCGCTCCGGCGCAGGCGTCACCACATATGATTATGATTCAATATCCAGG CTCTCGTCAATCTCGCAGAATATTCTGGGGACTGCCGAAGACGTCACTCTGGGTCTTGGCTACAATGAATCCAGTCAGAT CGTTACACGGACGACTTCGAACAGCCAATACTCCTACACCGGGCCCGCGGGACTGGAAGGAAGTTATATCTCTAATGGCC TGAATCAATATTCAGGCACGGCTGGTACAGCAAGGACGTATGATGCGAATGGCAACCTCTCCTCTGACGGCACTACTAGT TACGCGTATGATTCAGAAAATCGTCTGATCTCTGCTTCAGGTGCAAAGAATGCAAGTTTGGAGTACGATCCTCGCGGTCG ACTTCACCAGCTAATCAGCGGGGGGAGCGTCACACAGTTTCTCTTCGACGGTGATGCGCTGGTGGGGGAGCTTGATAGCA CTGGCAACCTGCTTCGCAGATATCTGCACGGGCCCAGGATTGACGAACCTCTCATCTGGTATGAGGGCCCTACCGTGGCT TCTGGATTGCGCCGGCATCTGTATGCGGATCATCAGGGATCGATTATCGGTGTTACGCTTAGTACCGGGTCATCGGTTTC ACGCAATACATATGACGCCTTTGGCTACCCCGGGTCTGCAAACCTGGGCCGGTTCTCATATACAGGGCAGATCCAGCTGC CGGAATTGGCACTCTATCACTACAAGGCCCGCGCATACGATTCCGCGACAGGTAGGTTCCTGCAGGCAGATCCTGTTGGG TATGAAGATCAGACGAATCTTTATGCATATGTCGGGAATGATCCGATGAATGCGACAGATCCGACGGGTATGATCTCCGA ACTTAAACTCGCTGCAGCATTGGGTAGGTCGGGAGGTCGGTACGTGGTTTCCGGCGGCGTAGCGTTAGCCGACAGCCCGG CCCCAGGCCCCGCGGACGTGGTTGGAGGAGCGTTGGCCGTTGGCACGACTGCGCTCCTGCTCTGGGATTTGGGAGACGCA CTCCTTAGCCCAAGTGACAACCAAAACGATAGCCTATTAGACGGTATCATGGAGGGTGCAACCAAAGGACGAGAGACAAA AGGGCGATCAGAACTGTGGGACAAAACCGGGGGATGGGATAAGGCCAATGAGGACTTCGACAAAATTGTCGACCCAGATT CTGTGCAGGATCGAGGAGATGGCGTTCGCACCGGTAAGTTGTCCGACGGCAGAAAGGTGAATGTGAGGCCGGATAGTACC GATGGCAGGCCAACGGTTGAAGTTCAGGATGGAAAAAATAGGAAAAAATATAGATATGAAGACTGA
Upstream 100 bases:
>100_bases TAAGCCCACGTCCTAGTCAGAATTTTTTGAAACAGAGAAAGCAATCAGGCAAATGGCGAGTGTGATTGGAAAGCTGATGT CAGGTATCGGCGTGGGTTGT
Downstream 100 bases:
>100_bases TGCCAAATACCCAAAACCAACTGCAATAACGTTCGATCGTATGTTCGAACGCTCTTGGGAAGTAACCGAAATAGTTGATA ATCGAAAAGGCTTCCATATA
Product: putative wall-associated protein
Products: NA
Alternate protein names: Cell wall-associated polypeptide CWBP200; CWBP200 [H]
Number of amino acids: Translated: 821; Mature: 821
Protein sequence:
>821_residues MIAGTCGAIASAQASPGAYTTGYRYNLAGNLTGVIRPDPDGAGPNKYLAERYSYDSNGMWVSVEFGELSTWQSEAIAPSA WGSVFTVFRAENASYDTLGLQAKTTITSGGATLKVTQFSHDEDRRLECQALRMNPAVFSSLPVSACSLGLSGAHGPDRIT RNVYDAAGRILKTQKAYGTPLQQDYATYTYSLNGQSASVADAKGNRSAFVYDGRDRLQRWEFPSKTTPGQTNTADYELYE YDPAGNRTSLRKRDGQTISFTFDALNRLSNKNVPGTVGDVHYGYDLRGLLLYERFGSVAGQGITTVYDGLGRATSSSTNL GGVALILSYQYDANGNRSRITHPDTSFFTYTFDGMDRVVTIHEGGGTQVLAIGYDEQGRRKTLVRSGAGVTTYDYDSISR LSSISQNILGTAEDVTLGLGYNESSQIVTRTTSNSQYSYTGPAGLEGSYISNGLNQYSGTAGTARTYDANGNLSSDGTTS YAYDSENRLISASGAKNASLEYDPRGRLHQLISGGSVTQFLFDGDALVGELDSTGNLLRRYLHGPRIDEPLIWYEGPTVA SGLRRHLYADHQGSIIGVTLSTGSSVSRNTYDAFGYPGSANLGRFSYTGQIQLPELALYHYKARAYDSATGRFLQADPVG YEDQTNLYAYVGNDPMNATDPTGMISELKLAAALGRSGGRYVVSGGVALADSPAPGPADVVGGALAVGTTALLLWDLGDA LLSPSDNQNDSLLDGIMEGATKGRETKGRSELWDKTGGWDKANEDFDKIVDPDSVQDRGDGVRTGKLSDGRKVNVRPDST DGRPTVEVQDGKNRKKYRYED
Sequences:
>Translated_821_residues MIAGTCGAIASAQASPGAYTTGYRYNLAGNLTGVIRPDPDGAGPNKYLAERYSYDSNGMWVSVEFGELSTWQSEAIAPSA WGSVFTVFRAENASYDTLGLQAKTTITSGGATLKVTQFSHDEDRRLECQALRMNPAVFSSLPVSACSLGLSGAHGPDRIT RNVYDAAGRILKTQKAYGTPLQQDYATYTYSLNGQSASVADAKGNRSAFVYDGRDRLQRWEFPSKTTPGQTNTADYELYE YDPAGNRTSLRKRDGQTISFTFDALNRLSNKNVPGTVGDVHYGYDLRGLLLYERFGSVAGQGITTVYDGLGRATSSSTNL GGVALILSYQYDANGNRSRITHPDTSFFTYTFDGMDRVVTIHEGGGTQVLAIGYDEQGRRKTLVRSGAGVTTYDYDSISR LSSISQNILGTAEDVTLGLGYNESSQIVTRTTSNSQYSYTGPAGLEGSYISNGLNQYSGTAGTARTYDANGNLSSDGTTS YAYDSENRLISASGAKNASLEYDPRGRLHQLISGGSVTQFLFDGDALVGELDSTGNLLRRYLHGPRIDEPLIWYEGPTVA SGLRRHLYADHQGSIIGVTLSTGSSVSRNTYDAFGYPGSANLGRFSYTGQIQLPELALYHYKARAYDSATGRFLQADPVG YEDQTNLYAYVGNDPMNATDPTGMISELKLAAALGRSGGRYVVSGGVALADSPAPGPADVVGGALAVGTTALLLWDLGDA LLSPSDNQNDSLLDGIMEGATKGRETKGRSELWDKTGGWDKANEDFDKIVDPDSVQDRGDGVRTGKLSDGRKVNVRPDST DGRPTVEVQDGKNRKKYRYED >Mature_821_residues MIAGTCGAIASAQASPGAYTTGYRYNLAGNLTGVIRPDPDGAGPNKYLAERYSYDSNGMWVSVEFGELSTWQSEAIAPSA WGSVFTVFRAENASYDTLGLQAKTTITSGGATLKVTQFSHDEDRRLECQALRMNPAVFSSLPVSACSLGLSGAHGPDRIT RNVYDAAGRILKTQKAYGTPLQQDYATYTYSLNGQSASVADAKGNRSAFVYDGRDRLQRWEFPSKTTPGQTNTADYELYE YDPAGNRTSLRKRDGQTISFTFDALNRLSNKNVPGTVGDVHYGYDLRGLLLYERFGSVAGQGITTVYDGLGRATSSSTNL GGVALILSYQYDANGNRSRITHPDTSFFTYTFDGMDRVVTIHEGGGTQVLAIGYDEQGRRKTLVRSGAGVTTYDYDSISR LSSISQNILGTAEDVTLGLGYNESSQIVTRTTSNSQYSYTGPAGLEGSYISNGLNQYSGTAGTARTYDANGNLSSDGTTS YAYDSENRLISASGAKNASLEYDPRGRLHQLISGGSVTQFLFDGDALVGELDSTGNLLRRYLHGPRIDEPLIWYEGPTVA SGLRRHLYADHQGSIIGVTLSTGSSVSRNTYDAFGYPGSANLGRFSYTGQIQLPELALYHYKARAYDSATGRFLQADPVG YEDQTNLYAYVGNDPMNATDPTGMISELKLAAALGRSGGRYVVSGGVALADSPAPGPADVVGGALAVGTTALLLWDLGDA LLSPSDNQNDSLLDGIMEGATKGRETKGRSELWDKTGGWDKANEDFDKIVDPDSVQDRGDGVRTGKLSDGRKVNVRPDST DGRPTVEVQDGKNRKKYRYED
Specific function: Still unknown. Not involved in cell membrane metabolism, motility, secretion or differentiation [H]
COG id: COG3209
COG function: function code M; Rhs family protein
Gene ontology:
Cell location: Secreted, cell wall. Note=Released into the medium [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008979 - InterPro: IPR022385 - InterPro: IPR006530 [H]
Pfam domain/function: PF05593 RHS_repeat [H]
EC number: NA
Molecular weight: Translated: 88240; Mature: 88240
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAGTCGAIASAQASPGAYTTGYRYNLAGNLTGVIRPDPDGAGPNKYLAERYSYDSNGMW CCCCCCCHHHCCCCCCCCEECCEEEEECCCEEEEEECCCCCCCCHHHHHHHHCCCCCCEE VSVEFGELSTWQSEAIAPSAWGSVFTVFRAENASYDTLGLQAKTTITSGGATLKVTQFSH EEEECCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCEECEEEEEEEECCCCEEEEEECCC DEDRRLECQALRMNPAVFSSLPVSACSLGLSGAHGPDRITRNVYDAAGRILKTQKAYGTP CCCCCEEEEEEECCHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEHHHHHCCC LQQDYATYTYSLNGQSASVADAKGNRSAFVYDGRDRLQRWEFPSKTTPGQTNTADYELYE CCCCCEEEEEEECCCCCEEECCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCEEEEE YDPAGNRTSLRKRDGQTISFTFDALNRLSNKNVPGTVGDVHYGYDLRGLLLYERFGSVAG ECCCCCCCCHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCC QGITTVYDGLGRATSSSTNLGGVALILSYQYDANGNRSRITHPDTSFFTYTFDGMDRVVT CCHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEECCCCCCEEEEEECCCEEEEE IHEGGGTQVLAIGYDEQGRRKTLVRSGAGVTTYDYDSISRLSSISQNILGTAEDVTLGLG EECCCCCEEEEECCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCCCCCEEEECC YNESSQIVTRTTSNSQYSYTGPAGLEGSYISNGLNQYSGTAGTARTYDANGNLSSDGTTS CCCCCCEEEEECCCCEEEECCCCCCCCHHHHCCHHHHCCCCCCCEEECCCCCCCCCCCEE YAYDSENRLISASGAKNASLEYDPRGRLHQLISGGSVTQFLFDGDALVGELDSTGNLLRR EEECCCCCEEEECCCCCCCEEECCCHHHHHHHCCCCEEEEEECCCCEEECCCHHHHHHHH YLHGPRIDEPLIWYEGPTVASGLRRHLYADHQGSIIGVTLSTGSSVSRNTYDAFGYPGSA HHCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC NLGRFSYTGQIQLPELALYHYKARAYDSATGRFLQADPVGYEDQTNLYAYVGNDPMNATD CCCEEEEECEEECCCEEEEEEHHHHCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCC PTGMISELKLAAALGRSGGRYVVSGGVALADSPAPGPADVVGGALAVGTTALLLWDLGDA CCCHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCHHHHCCHHHHHHHEEEEEHHHHH LLSPSDNQNDSLLDGIMEGATKGRETKGRSELWDKTGGWDKANEDFDKIVDPDSVQDRGD HCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCC GVRTGKLSDGRKVNVRPDSTDGRPTVEVQDGKNRKKYRYED CEEECCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCC >Mature Secondary Structure MIAGTCGAIASAQASPGAYTTGYRYNLAGNLTGVIRPDPDGAGPNKYLAERYSYDSNGMW CCCCCCCHHHCCCCCCCCEECCEEEEECCCEEEEEECCCCCCCCHHHHHHHHCCCCCCEE VSVEFGELSTWQSEAIAPSAWGSVFTVFRAENASYDTLGLQAKTTITSGGATLKVTQFSH EEEECCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCEECEEEEEEEECCCCEEEEEECCC DEDRRLECQALRMNPAVFSSLPVSACSLGLSGAHGPDRITRNVYDAAGRILKTQKAYGTP CCCCCEEEEEEECCHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEHHHHHCCC LQQDYATYTYSLNGQSASVADAKGNRSAFVYDGRDRLQRWEFPSKTTPGQTNTADYELYE CCCCCEEEEEEECCCCCEEECCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCEEEEE YDPAGNRTSLRKRDGQTISFTFDALNRLSNKNVPGTVGDVHYGYDLRGLLLYERFGSVAG ECCCCCCCCHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCC QGITTVYDGLGRATSSSTNLGGVALILSYQYDANGNRSRITHPDTSFFTYTFDGMDRVVT CCHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEECCCCCCEEEEEECCCEEEEE IHEGGGTQVLAIGYDEQGRRKTLVRSGAGVTTYDYDSISRLSSISQNILGTAEDVTLGLG EECCCCCEEEEECCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHCCCCCCEEEECC YNESSQIVTRTTSNSQYSYTGPAGLEGSYISNGLNQYSGTAGTARTYDANGNLSSDGTTS CCCCCCEEEEECCCCEEEECCCCCCCCHHHHCCHHHHCCCCCCCEEECCCCCCCCCCCEE YAYDSENRLISASGAKNASLEYDPRGRLHQLISGGSVTQFLFDGDALVGELDSTGNLLRR EEECCCCCEEEECCCCCCCEEECCCHHHHHHHCCCCEEEEEECCCCEEECCCHHHHHHHH YLHGPRIDEPLIWYEGPTVASGLRRHLYADHQGSIIGVTLSTGSSVSRNTYDAFGYPGSA HHCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC NLGRFSYTGQIQLPELALYHYKARAYDSATGRFLQADPVGYEDQTNLYAYVGNDPMNATD CCCEEEEECEEECCCEEEEEEHHHHCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCC PTGMISELKLAAALGRSGGRYVVSGGVALADSPAPGPADVVGGALAVGTTALLLWDLGDA CCCHHHHHHHHHHHCCCCCEEEEECCEEEECCCCCCCHHHHCCHHHHHHHEEEEEHHHHH LLSPSDNQNDSLLDGIMEGATKGRETKGRSELWDKTGGWDKANEDFDKIVDPDSVQDRGD HCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCC GVRTGKLSDGRKVNVRPDSTDGRPTVEVQDGKNRKKYRYED CEEECCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8316082; 7704263; 8969509; 9384377; 10658653 [H]