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The map label for this gene is ydiU [C]

Identifier: 114797399

GI number: 114797399

Start: 145081

End: 146508

Strand: Reverse

Name: ydiU [C]

Synonym: HNE_0163

Alternate gene names: 114797399

Gene position: 146508-145081 (Counterclockwise)

Preceding gene: 114798938

Following gene: 114798254

Centisome position: 3.95

GC content: 63.17

Gene sequence:

>1428_bases
ATGCAGAATAGCCCCCCGCCGCACGCCGCGCCTTCGTCTCGTCCGTTTCTTCGCATTGCGGAATCTTTCGCCGACGCCGT
GGAGCCGGCAGATTTTCCCGCCGCCCTGTTGCGTTGGCGCAACCAGCGCTGGGCCGCCGAAACCGGTCTGGGCGATCTAA
CCGATGCGGCCTGGATCGCGCATTTCGCACGCTTCTCCCCCTTGCCGGGAAATCTCCCGCAGCCACTGGCGATGCGGTAT
CACGGCCACCAGTTCGGCACCTACAATCCCCAGCTGGGAGATGGCCGAGGCTTTCTGTTCGCGCAGGTCCGCGACAAGGC
AGGCCGCCTTCTGGACCTGGGCACCAAAGGCTCCGGCCAGACGCCCTGGTCTCGTCAGGGAGATGGCCGGCTGACGCTCA
AGGGCGGCGTCCGCGAAATCCTTGCGGCCAGCTATCTTGAAGCGCTCGGCGTCAATACGTCAAAAGCCTTCAGCCTGATC
GAGACCGGCGAACAGCTCAGCCGGAACGATGAGCCCTCCCCTACCCGCTCCTCGGTGCTGGTGCGGCTTTCGCACAGCCA
TGTCCGTTTCGGCACCTTCCAGCGCTGCGCCTGGATGGAAGATCGCGAGAGCATGGCGCGCCTCGTCGATTACTGTGTCG
CAGAATTCTATCCAGATGCCGATGATCCGGATATGGCCCGCAAGACGTGCAAGCTGCTGGAAAATATCGCCCTCAAGACA
GGCCGGATGATCGGCCAGTGGATGGCTGCCGGATTCGTGCACGGCGTCATGAACACCGATAATTTCAACATTACAGGCGA
GACGTTTGACTTTGGCCCCTGGCGGTTCCTGCCGGTCTCAGATCCGAATTTCACGGCGGCCTACTTTGACTCTCAGGGCC
TTTACCGTTTCGGGCGCCAACCCGTGCAGGGGGGATGGGCATTGCAGCAACTCGCCTCGGCGATGCTGCTTCTGGCCGAA
GCCGACGATCTCGCCAAATCGCTGGCGCCCTATGAGGAAGCCTACCGGAACAGCTTCGCCGCCCATACCCACGCCTTGCT
GGGCATAAAGCCGGAAGGTGACATATCCGCCGACATCACGTTCCTCCAAGCCTTCTACGGCTGGATGACCGAGAGCGGCG
CAAACTGGCCGCAGACATTCTTCGACTGGTTTGGCGGCGCCGCCAGCGAAACGCGCGCCGCCGCCTCACCGCAGGCCGAT
CTCTACCGCGCAGCCGCCTTTGGGCCGGTCCGCGACATCCTCATGGCGCGCGAGGCTGTGCGCCCGGAACGCCTGGCAAC
GGCCTATTTCCAGAAACCCGCGCCGGTCAGCCTCATCATCGAGGAGGTGGAAGCCCTCTGGTCTCCGATTGCCGAGGCAG
ACGACTGGTCAGGCTTCAATGCCAAGGTCAGCCACATCGAAGAAGCCCGCGTCGCCCTCGCGCTATAA

Upstream 100 bases:

>100_bases
AGGTCGCAAAGGGGTGACTTGTGCTGCGGCGCTGCATACAAAAAAAGAACTTTTGCCCGCCGCCCCACATCCTCCGTTCA
CCCACAAGCTGGTGTAGATC

Downstream 100 bases:

>100_bases
CGCAAGGGAATGCCTTGATCTTCGCAGCGCGCTACAGGCACTTACCCGAAAAATATGGAGGCCCTTAATGACCGATAAGT
CCCGTCCCGGCCCACTCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MQNSPPPHAAPSSRPFLRIAESFADAVEPADFPAALLRWRNQRWAAETGLGDLTDAAWIAHFARFSPLPGNLPQPLAMRY
HGHQFGTYNPQLGDGRGFLFAQVRDKAGRLLDLGTKGSGQTPWSRQGDGRLTLKGGVREILAASYLEALGVNTSKAFSLI
ETGEQLSRNDEPSPTRSSVLVRLSHSHVRFGTFQRCAWMEDRESMARLVDYCVAEFYPDADDPDMARKTCKLLENIALKT
GRMIGQWMAAGFVHGVMNTDNFNITGETFDFGPWRFLPVSDPNFTAAYFDSQGLYRFGRQPVQGGWALQQLASAMLLLAE
ADDLAKSLAPYEEAYRNSFAAHTHALLGIKPEGDISADITFLQAFYGWMTESGANWPQTFFDWFGGAASETRAAASPQAD
LYRAAAFGPVRDILMAREAVRPERLATAYFQKPAPVSLIIEEVEALWSPIAEADDWSGFNAKVSHIEEARVALAL

Sequences:

>Translated_475_residues
MQNSPPPHAAPSSRPFLRIAESFADAVEPADFPAALLRWRNQRWAAETGLGDLTDAAWIAHFARFSPLPGNLPQPLAMRY
HGHQFGTYNPQLGDGRGFLFAQVRDKAGRLLDLGTKGSGQTPWSRQGDGRLTLKGGVREILAASYLEALGVNTSKAFSLI
ETGEQLSRNDEPSPTRSSVLVRLSHSHVRFGTFQRCAWMEDRESMARLVDYCVAEFYPDADDPDMARKTCKLLENIALKT
GRMIGQWMAAGFVHGVMNTDNFNITGETFDFGPWRFLPVSDPNFTAAYFDSQGLYRFGRQPVQGGWALQQLASAMLLLAE
ADDLAKSLAPYEEAYRNSFAAHTHALLGIKPEGDISADITFLQAFYGWMTESGANWPQTFFDWFGGAASETRAAASPQAD
LYRAAAFGPVRDILMAREAVRPERLATAYFQKPAPVSLIIEEVEALWSPIAEADDWSGFNAKVSHIEEARVALAL
>Mature_475_residues
MQNSPPPHAAPSSRPFLRIAESFADAVEPADFPAALLRWRNQRWAAETGLGDLTDAAWIAHFARFSPLPGNLPQPLAMRY
HGHQFGTYNPQLGDGRGFLFAQVRDKAGRLLDLGTKGSGQTPWSRQGDGRLTLKGGVREILAASYLEALGVNTSKAFSLI
ETGEQLSRNDEPSPTRSSVLVRLSHSHVRFGTFQRCAWMEDRESMARLVDYCVAEFYPDADDPDMARKTCKLLENIALKT
GRMIGQWMAAGFVHGVMNTDNFNITGETFDFGPWRFLPVSDPNFTAAYFDSQGLYRFGRQPVQGGWALQQLASAMLLLAE
ADDLAKSLAPYEEAYRNSFAAHTHALLGIKPEGDISADITFLQAFYGWMTESGANWPQTFFDWFGGAASETRAAASPQAD
LYRAAAFGPVRDILMAREAVRPERLATAYFQKPAPVSLIIEEVEALWSPIAEADDWSGFNAKVSHIEEARVALAL

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=337, Percent_Identity=30.5637982195846, Blast_Score=167, Evalue=2e-41,
Organism=Escherichia coli, GI1787999, Length=376, Percent_Identity=33.7765957446808, Blast_Score=192, Evalue=4e-50,
Organism=Saccharomyces cerevisiae, GI6325034, Length=295, Percent_Identity=30.8474576271186, Blast_Score=140, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 52447; Mature: 52447

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNSPPPHAAPSSRPFLRIAESFADAVEPADFPAALLRWRNQRWAAETGLGDLTDAAWIA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHCCCCCHHHHHHHH
HFARFSPLPGNLPQPLAMRYHGHQFGTYNPQLGDGRGFLFAQVRDKAGRLLDLGTKGSGQ
HHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCEEEECCCCCCC
TPWSRQGDGRLTLKGGVREILAASYLEALGVNTSKAFSLIETGEQLSRNDEPSPTRSSVL
CCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHEE
VRLSHSHVRFGTFQRCAWMEDRESMARLVDYCVAEFYPDADDPDMARKTCKLLENIALKT
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
GRMIGQWMAAGFVHGVMNTDNFNITGETFDFGPWRFLPVSDPNFTAAYFDSQGLYRFGRQ
HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEECCCCCCEEEEECCCCHHHHCCC
PVQGGWALQQLASAMLLLAEADDLAKSLAPYEEAYRNSFAAHTHALLGIKPEGDISADIT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEEECCCCCCCHHHHH
FLQAFYGWMTESGANWPQTFFDWFGGAASETRAAASPQADLYRAAAFGPVRDILMAREAV
HHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
RPERLATAYFQKPAPVSLIIEEVEALWSPIAEADDWSGFNAKVSHIEEARVALAL
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQNSPPPHAAPSSRPFLRIAESFADAVEPADFPAALLRWRNQRWAAETGLGDLTDAAWIA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHCCCCCHHHHHHHH
HFARFSPLPGNLPQPLAMRYHGHQFGTYNPQLGDGRGFLFAQVRDKAGRLLDLGTKGSGQ
HHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCEEEECCCCCCC
TPWSRQGDGRLTLKGGVREILAASYLEALGVNTSKAFSLIETGEQLSRNDEPSPTRSSVL
CCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHEE
VRLSHSHVRFGTFQRCAWMEDRESMARLVDYCVAEFYPDADDPDMARKTCKLLENIALKT
EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
GRMIGQWMAAGFVHGVMNTDNFNITGETFDFGPWRFLPVSDPNFTAAYFDSQGLYRFGRQ
HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEEECCCCCCEEEEECCCCHHHHCCC
PVQGGWALQQLASAMLLLAEADDLAKSLAPYEEAYRNSFAAHTHALLGIKPEGDISADIT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEEECCCCCCCHHHHH
FLQAFYGWMTESGANWPQTFFDWFGGAASETRAAASPQADLYRAAAFGPVRDILMAREAV
HHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
RPERLATAYFQKPAPVSLIIEEVEALWSPIAEADDWSGFNAKVSHIEEARVALAL
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]