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The map label for this gene is yciR [C]

Identifier: 114797349

GI number: 114797349

Start: 264638

End: 266413

Strand: Reverse

Name: yciR [C]

Synonym: HNE_0279

Alternate gene names: 114797349

Gene position: 266413-264638 (Counterclockwise)

Preceding gene: 114799435

Following gene: 114797988

Centisome position: 7.19

GC content: 61.32

Gene sequence:

>1776_bases
ATGACCGATCGCGCCCTGTTTGAGGCGTTCATCAACGCGTCGCCCTATCCGGTATTCGCGAAAGACGCATCGCATCGCTG
GGTCTATGGCAACAGCGCCTTTGAAATGATCGCCGGAGAAATGAACTTCGTCGGCGAAAAGGACAGCCTTCTGGTTCATC
CCGTCTGTATCGACCGTATACGGGAGGTCGAGCGCAAGGTGCTTGCGGGCGAGGACAGTCTGGACGAGGAAACGCTGATC
ACCGGCGCCGTCCTGCTTACCATCCGACGGCCGCTCCGGCTGCCTTCGGGTGAGACCCTCATCGCCGGCATCATCATCAG
CATTATTCACGCGCCGGATGTGGCATCTTCCGGCTCCAAGGCGTCCCTGCGCCGCCATGAACTGGCCATAGCGGATGTCC
GCAAGGTCGATACCGAACGCACCCGCTGGCTGGAGCAGCGCCTGGAACTCGTCGAGCAGGCTGAGACCGCCGCCACGAAA
GCCGCCCGCACTGACCCGGCAACAGGCCTGCGAAACCGCATGGGGTTCGACCTTGATCTGGCAACCGTGGCCGAGGAACC
CCTCCCCCCGGACAAGATCCTCTGCCTCGCCTTTCTCGATCTCGACCGCTTCAAATTCATCAATGACAGCTTCGGCCACA
AGGCCGGCGATACGGTGCTCAAATCCGTCGCCAAAAGGCTGATCACCTGGCCGGGTGTGCGCAGCCTGGCACGGATGGGC
GGAGATGAATTTGCCATCCTGTTCGATCACCCAAGGGTCGCGCCCCATGTACTGGTCGAAAACATCAGCCTCATGCGGCA
ACGCATCTTCCGCGCCGTTCGCGTCGGGGACAAGCTCATCCAGGTCTCGGGGTCTGTCGGCCTCTCGGTCCATGGTCTTG
ATGCGGATGATCTGGAATCCCTGAAGCTGAATGCCGATACCGCCCTGATCGAGGCCAAGCATCTCGGCCGCGAACAGGTA
AAGCTGTTCGATGCCGGCCTCGCTCTGCGGACCTATCGCCGCCACACACTGGAGCGCGACCTGCGCCAGGCCATTGCCCG
CAACCAGATCGTGCCTGCCTTTCAGCCCATCGTGAATGCAAAGACGCGCGCGATCGAAGGCGTCGAAGTTCTCGCCCGCT
GGAACCACCCCCAGCTTGGCCCCATCCCGGCTCAGGAATTCATCACCATTGCAACCGAGTGCGGCCTCATCTCCGCGCTC
GATCTGAGCATCGTGCGCCGCGCCTGCGGGCCTGTCAGAAACTGGCTGTCCGATAACCGCCTGCGCTTTGTCTCCTTCAA
CGCTTCCTCCCTGGAAATCGTGCGTCCCGGCTATGCCGCCGAAATCCTCAGCCTTATCCGCCGGTGCGGGGTCCAGGCCG
AAAAGGTCTGCATTGAACTCGTGGAATCGGCCATCATTCACGACATCGACCGCGCCCGCGCCAACATCTGTATCCTGAAG
GATCGCGGCGTGAAAATCGCGCTCGACGACTATGGCACAGGCTATTCAAACCTGCGCGCCCTGCTCGACCTTCCCATCGA
CCGTATCAAGATTGACCGCTCGATCATTGGCGACATCGGGGATGACGAGCGCGCCATGAAGCTCGTGCTCTCGGTCGTCC
AGCTGGCAAAACTGTTCAACGCCGAACTGATCGCCGAAGGCATCGAGGATGAGACGCAGGCCACCTATCTTGAAGGCATG
AATTGCGAATTCCTGCAGGGCTTCCATTTCAGCCCCGCCGTGGACGCCCAGCAATTCGACCTGCTCCTGACCCGTCAGAC
GTCCCGCGCCGCCTGA

Upstream 100 bases:

>100_bases
GGCAATTTGCGACCACCGCATCCCAACTGATCGAAGAGATTTATATGTCCCGACCGGCGCCGGAGCATACCCATATGCCC
TTTCCCAGCCGCCGTTACTC

Downstream 100 bases:

>100_bases
CGCCGCCTCAATGCCCCGGCTTGAGGTGGGCTGACTTGATCTTCTTGGCCAGCGACCATTTGTGCACCTCGGTCGGGCCG
TCATAAATCCGGAACGCGCG

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 591; Mature: 590

Protein sequence:

>591_residues
MTDRALFEAFINASPYPVFAKDASHRWVYGNSAFEMIAGEMNFVGEKDSLLVHPVCIDRIREVERKVLAGEDSLDEETLI
TGAVLLTIRRPLRLPSGETLIAGIIISIIHAPDVASSGSKASLRRHELAIADVRKVDTERTRWLEQRLELVEQAETAATK
AARTDPATGLRNRMGFDLDLATVAEEPLPPDKILCLAFLDLDRFKFINDSFGHKAGDTVLKSVAKRLITWPGVRSLARMG
GDEFAILFDHPRVAPHVLVENISLMRQRIFRAVRVGDKLIQVSGSVGLSVHGLDADDLESLKLNADTALIEAKHLGREQV
KLFDAGLALRTYRRHTLERDLRQAIARNQIVPAFQPIVNAKTRAIEGVEVLARWNHPQLGPIPAQEFITIATECGLISAL
DLSIVRRACGPVRNWLSDNRLRFVSFNASSLEIVRPGYAAEILSLIRRCGVQAEKVCIELVESAIIHDIDRARANICILK
DRGVKIALDDYGTGYSNLRALLDLPIDRIKIDRSIIGDIGDDERAMKLVLSVVQLAKLFNAELIAEGIEDETQATYLEGM
NCEFLQGFHFSPAVDAQQFDLLLTRQTSRAA

Sequences:

>Translated_591_residues
MTDRALFEAFINASPYPVFAKDASHRWVYGNSAFEMIAGEMNFVGEKDSLLVHPVCIDRIREVERKVLAGEDSLDEETLI
TGAVLLTIRRPLRLPSGETLIAGIIISIIHAPDVASSGSKASLRRHELAIADVRKVDTERTRWLEQRLELVEQAETAATK
AARTDPATGLRNRMGFDLDLATVAEEPLPPDKILCLAFLDLDRFKFINDSFGHKAGDTVLKSVAKRLITWPGVRSLARMG
GDEFAILFDHPRVAPHVLVENISLMRQRIFRAVRVGDKLIQVSGSVGLSVHGLDADDLESLKLNADTALIEAKHLGREQV
KLFDAGLALRTYRRHTLERDLRQAIARNQIVPAFQPIVNAKTRAIEGVEVLARWNHPQLGPIPAQEFITIATECGLISAL
DLSIVRRACGPVRNWLSDNRLRFVSFNASSLEIVRPGYAAEILSLIRRCGVQAEKVCIELVESAIIHDIDRARANICILK
DRGVKIALDDYGTGYSNLRALLDLPIDRIKIDRSIIGDIGDDERAMKLVLSVVQLAKLFNAELIAEGIEDETQATYLEGM
NCEFLQGFHFSPAVDAQQFDLLLTRQTSRAA
>Mature_590_residues
TDRALFEAFINASPYPVFAKDASHRWVYGNSAFEMIAGEMNFVGEKDSLLVHPVCIDRIREVERKVLAGEDSLDEETLIT
GAVLLTIRRPLRLPSGETLIAGIIISIIHAPDVASSGSKASLRRHELAIADVRKVDTERTRWLEQRLELVEQAETAATKA
ARTDPATGLRNRMGFDLDLATVAEEPLPPDKILCLAFLDLDRFKFINDSFGHKAGDTVLKSVAKRLITWPGVRSLARMGG
DEFAILFDHPRVAPHVLVENISLMRQRIFRAVRVGDKLIQVSGSVGLSVHGLDADDLESLKLNADTALIEAKHLGREQVK
LFDAGLALRTYRRHTLERDLRQAIARNQIVPAFQPIVNAKTRAIEGVEVLARWNHPQLGPIPAQEFITIATECGLISALD
LSIVRRACGPVRNWLSDNRLRFVSFNASSLEIVRPGYAAEILSLIRRCGVQAEKVCIELVESAIIHDIDRARANICILKD
RGVKIALDDYGTGYSNLRALLDLPIDRIKIDRSIIGDIGDDERAMKLVLSVVQLAKLFNAELIAEGIEDETQATYLEGMN
CEFLQGFHFSPAVDAQQFDLLLTRQTSRAA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=430, Percent_Identity=30.4651162790698, Blast_Score=183, Evalue=3e-47,
Organism=Escherichia coli, GI87081921, Length=491, Percent_Identity=25.2545824847251, Blast_Score=162, Evalue=7e-41,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=34.7280334728033, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081845, Length=242, Percent_Identity=35.1239669421488, Blast_Score=135, Evalue=8e-33,
Organism=Escherichia coli, GI1787055, Length=245, Percent_Identity=31.8367346938775, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI226510982, Length=350, Percent_Identity=28, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=28.5123966942149, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI87081743, Length=261, Percent_Identity=29.1187739463602, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=29.2, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=29.6875, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788849, Length=232, Percent_Identity=24.5689655172414, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87082096, Length=436, Percent_Identity=22.2477064220184, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788956, Length=254, Percent_Identity=31.1023622047244, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081977, Length=177, Percent_Identity=33.8983050847458, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788381, Length=202, Percent_Identity=29.7029702970297, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787056, Length=162, Percent_Identity=34.5679012345679, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787262, Length=176, Percent_Identity=31.25, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 65606; Mature: 65475

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRALFEAFINASPYPVFAKDASHRWVYGNSAFEMIAGEMNFVGEKDSLLVHPVCIDRI
CCHHHHHHHHHCCCCCCEEECCCCCCEEECCCHHHHHHCCHHCCCCCCCEEECHHHHHHH
REVERKVLAGEDSLDEETLITGAVLLTIRRPLRLPSGETLIAGIIISIIHAPDVASSGSK
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCH
ASLRRHELAIADVRKVDTERTRWLEQRLELVEQAETAATKAARTDPATGLRNRMGFDLDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEH
ATVAEEPLPPDKILCLAFLDLDRFKFINDSFGHKAGDTVLKSVAKRLITWPGVRSLARMG
HHHHCCCCCCHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCC
GDEFAILFDHPRVAPHVLVENISLMRQRIFRAVRVGDKLIQVSGSVGLSVHGLDADDLES
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCEEEECCCHHCHHH
LKLNADTALIEAKHLGREQVKLFDAGLALRTYRRHTLERDLRQAIARNQIVPAFQPIVNA
EEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
KTRAIEGVEVLARWNHPQLGPIPAQEFITIATECGLISALDLSIVRRACGPVRNWLSDNR
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
LRFVSFNASSLEIVRPGYAAEILSLIRRCGVQAEKVCIELVESAIIHDIDRARANICILK
EEEEEECCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEE
DRGVKIALDDYGTGYSNLRALLDLPIDRIKIDRSIIGDIGDDERAMKLVLSVVQLAKLFN
CCCCEEEEECCCCCHHHHHHHHHCCHHHEEECHHHHCCCCCHHHHHHHHHHHHHHHHHHH
AELIAEGIEDETQATYLEGMNCEFLQGFHFSPAVDAQQFDLLLTRQTSRAA
HHHHHHCCCCHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHEEEECCCCCCC
>Mature Secondary Structure 
TDRALFEAFINASPYPVFAKDASHRWVYGNSAFEMIAGEMNFVGEKDSLLVHPVCIDRI
CHHHHHHHHHCCCCCCEEECCCCCCEEECCCHHHHHHCCHHCCCCCCCEEECHHHHHHH
REVERKVLAGEDSLDEETLITGAVLLTIRRPLRLPSGETLIAGIIISIIHAPDVASSGSK
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCH
ASLRRHELAIADVRKVDTERTRWLEQRLELVEQAETAATKAARTDPATGLRNRMGFDLDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEH
ATVAEEPLPPDKILCLAFLDLDRFKFINDSFGHKAGDTVLKSVAKRLITWPGVRSLARMG
HHHHCCCCCCHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHCC
GDEFAILFDHPRVAPHVLVENISLMRQRIFRAVRVGDKLIQVSGSVGLSVHGLDADDLES
CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCEEEECCCHHCHHH
LKLNADTALIEAKHLGREQVKLFDAGLALRTYRRHTLERDLRQAIARNQIVPAFQPIVNA
EEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
KTRAIEGVEVLARWNHPQLGPIPAQEFITIATECGLISALDLSIVRRACGPVRNWLSDNR
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
LRFVSFNASSLEIVRPGYAAEILSLIRRCGVQAEKVCIELVESAIIHDIDRARANICILK
EEEEEECCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEE
DRGVKIALDDYGTGYSNLRALLDLPIDRIKIDRSIIGDIGDDERAMKLVLSVVQLAKLFN
CCCCEEEEECCCCCHHHHHHHHHCCHHHEEECHHHHCCCCCHHHHHHHHHHHHHHHHHHH
AELIAEGIEDETQATYLEGMNCEFLQGFHFSPAVDAQQFDLLLTRQTSRAA
HHHHHHCCCCHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]