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The map label for this gene is ccmF [H]

Identifier: 114797201

GI number: 114797201

Start: 1341985

End: 1343892

Strand: Direct

Name: ccmF [H]

Synonym: HNE_1310

Alternate gene names: 114797201

Gene position: 1341985-1343892 (Clockwise)

Preceding gene: 114797067

Following gene: 114797463

Centisome position: 36.22

GC content: 66.25

Gene sequence:

>1908_bases
ATGATCGAACTCGGCCATTTTGCCGCCTTCCTCGCACTGGGGCTGGCTTTGGCGCAGACGGTGCTGGGGCTGAAGGGCGA
GCGGCGCCTGGCGGGGCTGGCGGCTGTGGCGGGCTTTGGCGTGATGGCGCTGGCGTTCCTCACCATCGTTTATGCCTTCA
TGCGCTCGGATTTCTCGGTCGCTCTGGTGGCCAACAACTCCCACACGCTCAAACCCATGGTCTACAAGATCGCCGGGGCG
TGGGGGAACCATGAAGGCTCAATGGCGCTCTGGTGTCTCGTGACGCTCGGCTTTGGCGCGATTGCGGCGGCGACGATGCG
GACCGGGCGCGAGACGTTTGAGGCGCGGGCGCTGGGCGTGCAGGGGATGCTGGCGGTGGGGTCGCTGGCTTACCTGTTGT
TTGCGTCTTCGCCGTTCCTGCGGCTTGATCCGGCGCCGTTTCAGGGGGCGGGGCTGAACCCTCTGTTGCAGGACCCGGCG
CTCGCGATCCATCCGCCGATGCTTTATCTTGGCTATGTCGGATACTCCTTTGTCTTTGCGCTGGCGGCCGCTGGCCTGAT
GGAGGGGCGGATTGACCGGGTTTGGGCGAAGGAGGCGCGGATATGGTCTCTGGCGGCGTTTGCGCCGCTCACCCTTGGCA
TCGCGCTGGGCTCTTACTGGGCTTATTACGAGCTTGGCTGGGGCGGCTGGTGGTTCTGGGACCCGGTGGAGAATGCCTCG
CTGATGCCGTGGCTGATCGGGGCGGCGCTGCTGCATTCGGTGATCGTCACGGAGAAGCGCGAGAGCTTTGCGGCCTGGAC
GGCACTGCTGGCGGTGCTCTCATTCCTGTTCTCGATATTGGGCGCGTTCCTTGTGCGCTCGGGCGTGCTGACGTCTGTGC
ATGCGTTTGCGGTGGACCCGGAGCGGGGGACGCTGCTGCTGCTGGGACTGCTGGGCTATGGCGGGTTTGCGCTGGGGCTG
TTTGCGCTTCGGGCGCCGTCGCTGATGGGGGGCAAGCCCTGGACGCTGCTCAGCCGCGAAGGCGCGCTGATGGCGAATAA
TGTGGTGCTGATTGTTGCCACGCTGACGGTGTTGCTGGGCACGCTGTTTCCTTTGATTGCCGAGGCGTTCGGGCGGACGA
TTTCTGTGGGCGAGCCCTATTTCAATCTGACCTTTGTGCCGATCCTGGTGCTGGCGCTGATCATTCTGCCGGTGGCGCAG
GCCTGGGCGTGGGGCAAGGCGGACCTCAAATCCTGGCGGCGCTGGGCGATGGGCGGGGCGGCGTTGACGGCGGTGTTCAT
GCTGCTGGGCATCGGGCCGCTGGACATTCCGCTGGGCGCGGCGTTCGGGCTGGCGCTCGGTTTCTGGCTGGTGTTTGGCG
CCGTCTGGGAGATGAAGCGGCGGGCGATCAATATCCGGCGCATCTTCAAGATGCCGGCGCGCGTGTGGGCGATGACGCTC
GCGCATGCCGGGCTGGGGCTGTTCGTGATCGGCGCTGTGCTGGAGACGAGCGGGCGGTATGAGGCGACGCTGGCGCTGCC
CGAGGGCGGCTCTGGCACCGTAGCGGGCTGGGCGATCACGCTGGACGAGGTGCGCGCGATCGAGGGGCCGAACTGGTATG
CCGACAAGGCCGTGCTGACCGCGCGCAAGGGCAGCGCCAGCGCGGAACTTCTGCCGATGAAGCGCTTCTATCCGGCCGCG
ATGATGCCGACGACCGAGACAGCGATCCACAAGACCGGCGCGGGCGATCTCTATGTTGCCCTTGGCGAGCAGCGCGAGAT
TGACGGCGAGGCGCGCTGGGTGTTCCGCGTCTACTACAATCCGATGGTGGATGTGCTGTATCTGGGCGTCGTGCTGATCG
GGCTTGGCGGGCTGATCGGGATGTGGCCGGCAGGGCGGCGGCTCAAGCCCGCGGCAGACGAAGCGTAG

Upstream 100 bases:

>100_bases
GCACATTTACGCCGGAGGGCGAGTTCACTGCGCGCCAGCTGCTGGCCAAGCATGACGAGAATTACCAGCCGCGCGAGCTG
AAGCCGCTCGAGGCGGGCGG

Downstream 100 bases:

>100_bases
CCTTCAGGCCGGGCTGTTCGGTCGGGCCGTTGCCTGTGCCGAGGATCAGCTGGCCGCGATGCAACTCAGCGACAGATTCC
ACGAGGGCGAGGCCAAGGCC

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 635; Mature: 635

Protein sequence:

>635_residues
MIELGHFAAFLALGLALAQTVLGLKGERRLAGLAAVAGFGVMALAFLTIVYAFMRSDFSVALVANNSHTLKPMVYKIAGA
WGNHEGSMALWCLVTLGFGAIAAATMRTGRETFEARALGVQGMLAVGSLAYLLFASSPFLRLDPAPFQGAGLNPLLQDPA
LAIHPPMLYLGYVGYSFVFALAAAGLMEGRIDRVWAKEARIWSLAAFAPLTLGIALGSYWAYYELGWGGWWFWDPVENAS
LMPWLIGAALLHSVIVTEKRESFAAWTALLAVLSFLFSILGAFLVRSGVLTSVHAFAVDPERGTLLLLGLLGYGGFALGL
FALRAPSLMGGKPWTLLSREGALMANNVVLIVATLTVLLGTLFPLIAEAFGRTISVGEPYFNLTFVPILVLALIILPVAQ
AWAWGKADLKSWRRWAMGGAALTAVFMLLGIGPLDIPLGAAFGLALGFWLVFGAVWEMKRRAINIRRIFKMPARVWAMTL
AHAGLGLFVIGAVLETSGRYEATLALPEGGSGTVAGWAITLDEVRAIEGPNWYADKAVLTARKGSASAELLPMKRFYPAA
MMPTTETAIHKTGAGDLYVALGEQREIDGEARWVFRVYYNPMVDVLYLGVVLIGLGGLIGMWPAGRRLKPAADEA

Sequences:

>Translated_635_residues
MIELGHFAAFLALGLALAQTVLGLKGERRLAGLAAVAGFGVMALAFLTIVYAFMRSDFSVALVANNSHTLKPMVYKIAGA
WGNHEGSMALWCLVTLGFGAIAAATMRTGRETFEARALGVQGMLAVGSLAYLLFASSPFLRLDPAPFQGAGLNPLLQDPA
LAIHPPMLYLGYVGYSFVFALAAAGLMEGRIDRVWAKEARIWSLAAFAPLTLGIALGSYWAYYELGWGGWWFWDPVENAS
LMPWLIGAALLHSVIVTEKRESFAAWTALLAVLSFLFSILGAFLVRSGVLTSVHAFAVDPERGTLLLLGLLGYGGFALGL
FALRAPSLMGGKPWTLLSREGALMANNVVLIVATLTVLLGTLFPLIAEAFGRTISVGEPYFNLTFVPILVLALIILPVAQ
AWAWGKADLKSWRRWAMGGAALTAVFMLLGIGPLDIPLGAAFGLALGFWLVFGAVWEMKRRAINIRRIFKMPARVWAMTL
AHAGLGLFVIGAVLETSGRYEATLALPEGGSGTVAGWAITLDEVRAIEGPNWYADKAVLTARKGSASAELLPMKRFYPAA
MMPTTETAIHKTGAGDLYVALGEQREIDGEARWVFRVYYNPMVDVLYLGVVLIGLGGLIGMWPAGRRLKPAADEA
>Mature_635_residues
MIELGHFAAFLALGLALAQTVLGLKGERRLAGLAAVAGFGVMALAFLTIVYAFMRSDFSVALVANNSHTLKPMVYKIAGA
WGNHEGSMALWCLVTLGFGAIAAATMRTGRETFEARALGVQGMLAVGSLAYLLFASSPFLRLDPAPFQGAGLNPLLQDPA
LAIHPPMLYLGYVGYSFVFALAAAGLMEGRIDRVWAKEARIWSLAAFAPLTLGIALGSYWAYYELGWGGWWFWDPVENAS
LMPWLIGAALLHSVIVTEKRESFAAWTALLAVLSFLFSILGAFLVRSGVLTSVHAFAVDPERGTLLLLGLLGYGGFALGL
FALRAPSLMGGKPWTLLSREGALMANNVVLIVATLTVLLGTLFPLIAEAFGRTISVGEPYFNLTFVPILVLALIILPVAQ
AWAWGKADLKSWRRWAMGGAALTAVFMLLGIGPLDIPLGAAFGLALGFWLVFGAVWEMKRRAINIRRIFKMPARVWAMTL
AHAGLGLFVIGAVLETSGRYEATLALPEGGSGTVAGWAITLDEVRAIEGPNWYADKAVLTARKGSASAELLPMKRFYPAA
MMPTTETAIHKTGAGDLYVALGEQREIDGEARWVFRVYYNPMVDVLYLGVVLIGLGGLIGMWPAGRRLKPAADEA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=648, Percent_Identity=42.1296296296296, Blast_Score=410, Evalue=1e-115,
Organism=Escherichia coli, GI1790511, Length=583, Percent_Identity=33.2761578044597, Blast_Score=249, Evalue=5e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 68145; Mature: 68145

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELGHFAAFLALGLALAQTVLGLKGERRLAGLAAVAGFGVMALAFLTIVYAFMRSDFSV
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
ALVANNSHTLKPMVYKIAGAWGNHEGSMALWCLVTLGFGAIAAATMRTGRETFEARALGV
EEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
QGMLAVGSLAYLLFASSPFLRLDPAPFQGAGLNPLLQDPALAIHPPMLYLGYVGYSFVFA
HHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHCCCCCEECCHHHHHHHHHHHHHHH
LAAAGLMEGRIDRVWAKEARIWSLAAFAPLTLGIALGSYWAYYELGWGGWWFWDPVENAS
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCEEEECCCCCCC
LMPWLIGAALLHSVIVTEKRESFAAWTALLAVLSFLFSILGAFLVRSGVLTSVHAFAVDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHEEECC
ERGTLLLLGLLGYGGFALGLFALRAPSLMGGKPWTLLSREGALMANNVVLIVATLTVLLG
CCCCEEEEHHHHCCHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECCHHHHHHHHHHHHH
TLFPLIAEAFGRTISVGEPYFNLTFVPILVLALIILPVAQAWAWGKADLKSWRRWAMGGA
HHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHH
ALTAVFMLLGIGPLDIPLGAAFGLALGFWLVFGAVWEMKRRAINIRRIFKMPARVWAMTL
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHAGLGLFVIGAVLETSGRYEATLALPEGGSGTVAGWAITLDEVRAIEGPNWYADKAVLT
HHCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCEEE
ARKGSASAELLPMKRFYPAAMMPTTETAIHKTGAGDLYVALGEQREIDGEARWVFRVYYN
ECCCCCCCCCCCHHHHCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEEEHH
PMVDVLYLGVVLIGLGGLIGMWPAGRRLKPAADEA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIELGHFAAFLALGLALAQTVLGLKGERRLAGLAAVAGFGVMALAFLTIVYAFMRSDFSV
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
ALVANNSHTLKPMVYKIAGAWGNHEGSMALWCLVTLGFGAIAAATMRTGRETFEARALGV
EEEECCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
QGMLAVGSLAYLLFASSPFLRLDPAPFQGAGLNPLLQDPALAIHPPMLYLGYVGYSFVFA
HHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHCCCCCEECCHHHHHHHHHHHHHHH
LAAAGLMEGRIDRVWAKEARIWSLAAFAPLTLGIALGSYWAYYELGWGGWWFWDPVENAS
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEECCCCEEEECCCCCCC
LMPWLIGAALLHSVIVTEKRESFAAWTALLAVLSFLFSILGAFLVRSGVLTSVHAFAVDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHEEECC
ERGTLLLLGLLGYGGFALGLFALRAPSLMGGKPWTLLSREGALMANNVVLIVATLTVLLG
CCCCEEEEHHHHCCHHHHHHHHHHCCCCCCCCCEEEEECCCCEEECCHHHHHHHHHHHHH
TLFPLIAEAFGRTISVGEPYFNLTFVPILVLALIILPVAQAWAWGKADLKSWRRWAMGGA
HHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHH
ALTAVFMLLGIGPLDIPLGAAFGLALGFWLVFGAVWEMKRRAINIRRIFKMPARVWAMTL
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AHAGLGLFVIGAVLETSGRYEATLALPEGGSGTVAGWAITLDEVRAIEGPNWYADKAVLT
HHCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCCCCCCCEEE
ARKGSASAELLPMKRFYPAAMMPTTETAIHKTGAGDLYVALGEQREIDGEARWVFRVYYN
ECCCCCCCCCCCHHHHCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEEEHH
PMVDVLYLGVVLIGLGGLIGMWPAGRRLKPAADEA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1310666 [H]