Click here to switch to the map view.

The map label for this gene is intB [H]

Identifier: 114797188

GI number: 114797188

Start: 1771923

End: 1773140

Strand: Reverse

Name: intB [H]

Synonym: HNE_1729

Alternate gene names: 114797188

Gene position: 1773140-1771923 (Counterclockwise)

Preceding gene: 114799923

Following gene: 114798193

Centisome position: 47.86

GC content: 60.92

Gene sequence:

>1218_bases
ATGCCAACACTTTTTGACGATGCCAACAAAATGCCCCTGACAGACACACGAATCCGCGGCCTCAAACCGGACAGCCGCAC
GAAGCGCTATAGTGACGGCTACGGCCTCTATCTGGAGGTAACAACTGGGGGGTCAAAGCTCTGGAAGATGGCTTACCGCT
TTGAGGGCAAGCAGAAGACCTTGTCGTTCGGCCCCTACCCCGAGATCTCCCTTGGGCGGGCCAGAGAGCGGCGCCTAGAA
GCTCGGACGATGCTTTTCGAAGGCGTTGACCCTTCGGCTACCAAAAAGGCTGACCAGGAAGCGCGGCGCGCTGAAATCGA
AGATACCTTCGCCCGGATCGCTGATGAGCTGCTCCAGAAGGAGGAGATCGAGGGACTCGCCCCGGCCACGCTCAAGAAGA
AACGCTGGCTCGCGCGCCTTGCATGCGAAGACCTTGGCCCGAAGCCCATTCGGGATATCAAGGCACCCGAAATCCTCGCG
ACCCTTCGAAGGGTCGAGAAAGAGGGAAACTACGAATCAGCACGCCGGCTTCGTGCCCTGATCGGTCAGATCTTCCGCTA
CGCGATCGCAACGACCCGGGCGGACGGTGACCCGACCGTGGCGCTGAAGGGGGCGCTTATCGCGCCCAAGGTCCAGCACA
GGGCCGCCGTGACCGACCGCAAGGGGTTTGCGAAGCTGATCAGGACCGTCTGGTCGTATGAGGGCACGATCGAAGCCCAG
GCTGCCTTGAAGCTGCTGGCGCTGCTCTATCCCCGTCCTGGCGAACTACGCCTGTCCCACTGGAGCGAGTTCGACTTTGA
AGAGCGGATGTGGACCATCCCGGCCGACCGGACCAAAACGCGCAAACTGCACACAAAGCCCCTGCCCGGACCCGCCATTG
AGATCCTGAAGGATCTGAAGCGGTTCACAGGCAAAGGTTCGCTCGTCCTTCCGTCTCAGATGTCGGACGGACGGCCCCTC
AGCGAGAACACCATGAACTACGCGCTGCGCCGGCTCGATATCCAAGCAGACGTCCATACGTGCCACGGGTTCCGGGCCAG
CGCTTCAAGCCTCCTCAATGAGAGTGGGAAATGGCACCCTGACGCCATCGAAGCCGAGCTCGCCCATGTCGGCGACAATC
ATGTGCGCAAGGCCTATCACCGAGCAACCTACTGGGACGAACGCGTCCGCATGGCGGAATGGTGGGCGGCAGAAGTGATG
AGATTTGCAGCTCCATGA

Upstream 100 bases:

>100_bases
CGTCTTCGTCCGCCAACGTCCACCCAAAATCGTTGGAAGAAATTTTTTTTGTTGGCATTTTGTTGGCATCGAGACGGCCC
GGAATCGCAACGGCCGGAAA

Downstream 100 bases:

>100_bases
AAACGTAAACACCCCCATCAAGACCGTTTAGCGAACTGACTGGCGCGCGCGCACACAACAAGTCGGTCGCCAAAAATTTA
ATGCGGATGCTCGCGTCAAA

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MPTLFDDANKMPLTDTRIRGLKPDSRTKRYSDGYGLYLEVTTGGSKLWKMAYRFEGKQKTLSFGPYPEISLGRARERRLE
ARTMLFEGVDPSATKKADQEARRAEIEDTFARIADELLQKEEIEGLAPATLKKKRWLARLACEDLGPKPIRDIKAPEILA
TLRRVEKEGNYESARRLRALIGQIFRYAIATTRADGDPTVALKGALIAPKVQHRAAVTDRKGFAKLIRTVWSYEGTIEAQ
AALKLLALLYPRPGELRLSHWSEFDFEERMWTIPADRTKTRKLHTKPLPGPAIEILKDLKRFTGKGSLVLPSQMSDGRPL
SENTMNYALRRLDIQADVHTCHGFRASASSLLNESGKWHPDAIEAELAHVGDNHVRKAYHRATYWDERVRMAEWWAAEVM
RFAAP

Sequences:

>Translated_405_residues
MPTLFDDANKMPLTDTRIRGLKPDSRTKRYSDGYGLYLEVTTGGSKLWKMAYRFEGKQKTLSFGPYPEISLGRARERRLE
ARTMLFEGVDPSATKKADQEARRAEIEDTFARIADELLQKEEIEGLAPATLKKKRWLARLACEDLGPKPIRDIKAPEILA
TLRRVEKEGNYESARRLRALIGQIFRYAIATTRADGDPTVALKGALIAPKVQHRAAVTDRKGFAKLIRTVWSYEGTIEAQ
AALKLLALLYPRPGELRLSHWSEFDFEERMWTIPADRTKTRKLHTKPLPGPAIEILKDLKRFTGKGSLVLPSQMSDGRPL
SENTMNYALRRLDIQADVHTCHGFRASASSLLNESGKWHPDAIEAELAHVGDNHVRKAYHRATYWDERVRMAEWWAAEVM
RFAAP
>Mature_404_residues
PTLFDDANKMPLTDTRIRGLKPDSRTKRYSDGYGLYLEVTTGGSKLWKMAYRFEGKQKTLSFGPYPEISLGRARERRLEA
RTMLFEGVDPSATKKADQEARRAEIEDTFARIADELLQKEEIEGLAPATLKKKRWLARLACEDLGPKPIRDIKAPEILAT
LRRVEKEGNYESARRLRALIGQIFRYAIATTRADGDPTVALKGALIAPKVQHRAAVTDRKGFAKLIRTVWSYEGTIEAQA
ALKLLALLYPRPGELRLSHWSEFDFEERMWTIPADRTKTRKLHTKPLPGPAIEILKDLKRFTGKGSLVLPSQMSDGRPLS
ENTMNYALRRLDIQADVHTCHGFRASASSLLNESGKWHPDAIEAELAHVGDNHVRKAYHRATYWDERVRMAEWWAAEVMR
FAAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=387, Percent_Identity=33.0749354005168, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1788690, Length=392, Percent_Identity=32.6530612244898, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI145693166, Length=393, Percent_Identity=31.5521628498728, Blast_Score=178, Evalue=6e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46053; Mature: 45922

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLFDDANKMPLTDTRIRGLKPDSRTKRYSDGYGLYLEVTTGGSKLWKMAYRFEGKQKT
CCCCCCCCCCCCCCHHHHCCCCCCHHCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCC
LSFGPYPEISLGRARERRLEARTMLFEGVDPSATKKADQEARRAEIEDTFARIADELLQK
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEIEGLAPATLKKKRWLARLACEDLGPKPIRDIKAPEILATLRRVEKEGNYESARRLRAL
HHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH
IGQIFRYAIATTRADGDPTVALKGALIAPKVQHRAAVTDRKGFAKLIRTVWSYEGTIEAQ
HHHHHHHHHHHHCCCCCCCEEEECCEECCCHHHHHHHHCHHHHHHHHHHHHCCCCCCHHH
AALKLLALLYPRPGELRLSHWSEFDFEERMWTIPADRTKTRKLHTKPLPGPAIEILKDLK
HHHHHHHHHCCCCCCEEECCCCCCCHHHCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
RFTGKGSLVLPSQMSDGRPLSENTMNYALRRLDIQADVHTCHGFRASASSLLNESGKWHP
HHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCCCCC
DAIEAELAHVGDNHVRKAYHRATYWDERVRMAEWWAAEVMRFAAP
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PTLFDDANKMPLTDTRIRGLKPDSRTKRYSDGYGLYLEVTTGGSKLWKMAYRFEGKQKT
CCCCCCCCCCCCCHHHHCCCCCCHHCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCC
LSFGPYPEISLGRARERRLEARTMLFEGVDPSATKKADQEARRAEIEDTFARIADELLQK
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEIEGLAPATLKKKRWLARLACEDLGPKPIRDIKAPEILATLRRVEKEGNYESARRLRAL
HHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH
IGQIFRYAIATTRADGDPTVALKGALIAPKVQHRAAVTDRKGFAKLIRTVWSYEGTIEAQ
HHHHHHHHHHHHCCCCCCCEEEECCEECCCHHHHHHHHCHHHHHHHHHHHHCCCCCCHHH
AALKLLALLYPRPGELRLSHWSEFDFEERMWTIPADRTKTRKLHTKPLPGPAIEILKDLK
HHHHHHHHHCCCCCCEEECCCCCCCHHHCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
RFTGKGSLVLPSQMSDGRPLSENTMNYALRRLDIQADVHTCHGFRASASSLLNESGKWHP
HHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCCCCC
DAIEAELAHVGDNHVRKAYHRATYWDERVRMAEWWAAEVMRFAAP
CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]