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The map label for this gene is abgR [H]

Identifier: 114797125

GI number: 114797125

Start: 1479887

End: 1480837

Strand: Direct

Name: abgR [H]

Synonym: HNE_1452

Alternate gene names: 114797125

Gene position: 1479887-1480837 (Clockwise)

Preceding gene: 114798675

Following gene: 114797069

Centisome position: 39.94

GC content: 60.99

Gene sequence:

>951_bases
ATGGATTACTCACACGATCTAACAATCAGTTGTCCATATGCACAATCTGTGTTTGTTAATGTCATGGAGCTCAGGCAACT
CGAACATGTTCTTGCGGTTGTCGAGACCGGCAGTCTGACCAGCGCGGCAGCGCGAGTGGGGCTGACGCAGCAGGCCTTGT
CGAAATCCCTGTCCCGACTGGAATCCGATATTGGCGGAAAACTCTTCGAGCGTGAAACGCGGGGTATGGCCCTCACCCGC
CTCGGCGAAACCGTCGTCGAGCACGCGCGCGATGTGGTGGCCAGTGCGGGCCGCCTGAAATCTGCAGCCGCTGCAGAGCT
GGGTCTCGAGCGCGGAAAGCTGGTGGTCGGACTGAGCCCGATCGCGGCGACGACCTTCATAGGTCAGAGCGTCGCGCGCT
TTGCGGAGGCCCACCCCAATCTCAGGATCGATGTCGAAGCCGGCCTCGACACAGACTTCGTCGCCGCGCTGCATCGCGGT
CAGATTGATCTGGCGCTCTCGACCCGGACTATCGGCCAGGAAGACAGTGTGCTGGTGGAGCAGTTCACAAACGAACCCTG
GGGTATCGCAGGCCGCATCGACCATCCCTGGCTTGGCGGCGCCAGATCTCTGGCCGATCTTAAGGGCGCCGCCTGGGTGA
TTGGCCGCAACACGGATCTTCTTGATGAAGCCATCGAAGAGGCTTTTGCCGCCTGCGGCCTTGCCCGCCCTCAACCCGGC
ATCGTGACAACGTCCGTCCTGTTCACACTGACAGCCCTGATGACCACCGACCGGCTGGCAATCCTGCCCCGTTCGCTGTG
CCAACACCATACATCGCTGATGTGGCTGGATCTGAGCAACGGCGCATGGTCAACGCCGCTTTTCCTTATGCGCCGCAAAC
GGGCCCATATCGGTCTGGCTGCGCGCAAATTGCTGGATATGCTGAGGACAGAGGCGGGCGAGGCAGGATAG

Upstream 100 bases:

>100_bases
ACATCCGTATCCACAGATGACAACATCTACTTCTTCGCTCCAGGAGCTGACACTTTTAAGGCTGGCCATGATCCGTCTCC
TCTGACGAGATCATTCGGCC

Downstream 100 bases:

>100_bases
TGCCTAAGTCTTCCTACCAGGATTTGCCGCCAACCCATTCGCCTGCGGACATGCCGAGCCTGTCTATCTCAACAGTGTCC
CAGATGCCCGCCTGATAATA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MDYSHDLTISCPYAQSVFVNVMELRQLEHVLAVVETGSLTSAAARVGLTQQALSKSLSRLESDIGGKLFERETRGMALTR
LGETVVEHARDVVASAGRLKSAAAAELGLERGKLVVGLSPIAATTFIGQSVARFAEAHPNLRIDVEAGLDTDFVAALHRG
QIDLALSTRTIGQEDSVLVEQFTNEPWGIAGRIDHPWLGGARSLADLKGAAWVIGRNTDLLDEAIEEAFAACGLARPQPG
IVTTSVLFTLTALMTTDRLAILPRSLCQHHTSLMWLDLSNGAWSTPLFLMRRKRAHIGLAARKLLDMLRTEAGEAG

Sequences:

>Translated_316_residues
MDYSHDLTISCPYAQSVFVNVMELRQLEHVLAVVETGSLTSAAARVGLTQQALSKSLSRLESDIGGKLFERETRGMALTR
LGETVVEHARDVVASAGRLKSAAAAELGLERGKLVVGLSPIAATTFIGQSVARFAEAHPNLRIDVEAGLDTDFVAALHRG
QIDLALSTRTIGQEDSVLVEQFTNEPWGIAGRIDHPWLGGARSLADLKGAAWVIGRNTDLLDEAIEEAFAACGLARPQPG
IVTTSVLFTLTALMTTDRLAILPRSLCQHHTSLMWLDLSNGAWSTPLFLMRRKRAHIGLAARKLLDMLRTEAGEAG
>Mature_316_residues
MDYSHDLTISCPYAQSVFVNVMELRQLEHVLAVVETGSLTSAAARVGLTQQALSKSLSRLESDIGGKLFERETRGMALTR
LGETVVEHARDVVASAGRLKSAAAAELGLERGKLVVGLSPIAATTFIGQSVARFAEAHPNLRIDVEAGLDTDFVAALHRG
QIDLALSTRTIGQEDSVLVEQFTNEPWGIAGRIDHPWLGGARSLADLKGAAWVIGRNTDLLDEAIEEAFAACGLARPQPG
IVTTSVLFTLTALMTTDRLAILPRSLCQHHTSLMWLDLSNGAWSTPLFLMRRKRAHIGLAARKLLDMLRTEAGEAG

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=300, Percent_Identity=23.3333333333333, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI145693105, Length=174, Percent_Identity=24.1379310344828, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI157672245, Length=284, Percent_Identity=25.7042253521127, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790399, Length=212, Percent_Identity=26.8867924528302, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081904, Length=155, Percent_Identity=32.258064516129, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790262, Length=148, Percent_Identity=26.3513513513513, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787530, Length=188, Percent_Identity=25, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789506, Length=257, Percent_Identity=22.9571984435798, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34054; Mature: 34054

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYSHDLTISCPYAQSVFVNVMELRQLEHVLAVVETGSLTSAAARVGLTQQALSKSLSRL
CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHH
ESDIGGKLFERETRGMALTRLGETVVEHARDVVASAGRLKSAAAAELGLERGKLVVGLSP
HHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCH
IAATTFIGQSVARFAEAHPNLRIDVEAGLDTDFVAALHRGQIDLALSTRTIGQEDSVLVE
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCHHHHH
QFTNEPWGIAGRIDHPWLGGARSLADLKGAAWVIGRNTDLLDEAIEEAFAACGLARPQPG
HHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
IVTTSVLFTLTALMTTDRLAILPRSLCQHHTSLMWLDLSNGAWSTPLFLMRRKRAHIGLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
ARKLLDMLRTEAGEAG
HHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDYSHDLTISCPYAQSVFVNVMELRQLEHVLAVVETGSLTSAAARVGLTQQALSKSLSRL
CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHH
ESDIGGKLFERETRGMALTRLGETVVEHARDVVASAGRLKSAAAAELGLERGKLVVGLSP
HHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCH
IAATTFIGQSVARFAEAHPNLRIDVEAGLDTDFVAALHRGQIDLALSTRTIGQEDSVLVE
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCEEEEEEECCCCCCCHHHHH
QFTNEPWGIAGRIDHPWLGGARSLADLKGAAWVIGRNTDLLDEAIEEAFAACGLARPQPG
HHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
IVTTSVLFTLTALMTTDRLAILPRSLCQHHTSLMWLDLSNGAWSTPLFLMRRKRAHIGLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
ARKLLDMLRTEAGEAG
HHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]