| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is linC [H]
Identifier: 114797098
GI number: 114797098
Start: 1466483
End: 1467235
Strand: Direct
Name: linC [H]
Synonym: HNE_1435
Alternate gene names: 114797098
Gene position: 1466483-1467235 (Clockwise)
Preceding gene: 114798062
Following gene: 114798451
Centisome position: 39.58
GC content: 57.77
Gene sequence:
>753_bases ATGCTTCTCAACGGAAAGACAATCATCATAACCGGCGCAAGCAGCGGTATCGGAGCCGCAGCCGCTAGGATTTTTGCGGC CGAAGGCGCGAACGTGGTTCTTGGAGCCCGCCGCGCCGAACTACTTGAGCAAATCACAAAGGATATTTCTGCCCACAGGG GCGAGGCGGTTTTCCTGGCAGGGGACGTCGAAGACAGCGCCTATGCCGCAGACCTGGTGAAGCTTGCAGAGTCGCGCTTC GGGGGGCTCGACGGCGCTTTCAACAATGCAGGTGTGACGGGTGATATGGGACCAATCCCCGACATGGCAGAAAGCAACTG GCACAAAGTGATAGCGGTAAATCTCAACAGCGGCTTCTACGCGGCAAAGCATCAAATTCCGGCTATGCGCAAACGTGGTG GCGGTTCCATCGTCTTCACCTCCTCATTCGTCGGACACACGATTGGTTTGCCCGGCATGGGGGCCTACGCCGCTGCAAAG GCTGGTCTCATCGGCATTACCCAGGTGCTTGCGGCGGAGCATGGTCCTGAAAACATTCGCGTCAATGCACTCCTGCCAGG AGGCACGATGACGCCAATGGCCGGGGATGATGCCGATTTTCATGAGGTCGTGCGCGGGTTTCACGCGCTGAAGCGCATGG CGGAGCCGTCTGAAATCGCTAACGCCGCGCTCTTCTTGCTTTCTGATCACGCATCCTTCGTAACCGGAAGCGCCATGATC GCGGATGGCGGAAACTCGATAAGCAAACTGTAA
Upstream 100 bases:
>100_bases CTTCCTCCGCCAACAGAACAACAAACTGCGCAAGAAACGGGTGGGTTGAGCACCTCGATATCGTCAGACACCTCCTGATC CTCAATCAATGGAGATGGGA
Downstream 100 bases:
>100_bases GAAATTGCCGGTCTCCGTCATTCCCCATTGCGACCGGTCGCCTGGCTTTTACCGACCGGCGGAAACGGGCTAATCTCTGA CGTTGCGGGCTGGCCTCCTG
Product: short chain dehydrogenase
Products: NA
Alternate protein names: 2,5-DDOL dehydrogenase [H]
Number of amino acids: Translated: 250; Mature: 250
Protein sequence:
>250_residues MLLNGKTIIITGASSGIGAAAARIFAAEGANVVLGARRAELLEQITKDISAHRGEAVFLAGDVEDSAYAADLVKLAESRF GGLDGAFNNAGVTGDMGPIPDMAESNWHKVIAVNLNSGFYAAKHQIPAMRKRGGGSIVFTSSFVGHTIGLPGMGAYAAAK AGLIGITQVLAAEHGPENIRVNALLPGGTMTPMAGDDADFHEVVRGFHALKRMAEPSEIANAALFLLSDHASFVTGSAMI ADGGNSISKL
Sequences:
>Translated_250_residues MLLNGKTIIITGASSGIGAAAARIFAAEGANVVLGARRAELLEQITKDISAHRGEAVFLAGDVEDSAYAADLVKLAESRF GGLDGAFNNAGVTGDMGPIPDMAESNWHKVIAVNLNSGFYAAKHQIPAMRKRGGGSIVFTSSFVGHTIGLPGMGAYAAAK AGLIGITQVLAAEHGPENIRVNALLPGGTMTPMAGDDADFHEVVRGFHALKRMAEPSEIANAALFLLSDHASFVTGSAMI ADGGNSISKL >Mature_250_residues MLLNGKTIIITGASSGIGAAAARIFAAEGANVVLGARRAELLEQITKDISAHRGEAVFLAGDVEDSAYAADLVKLAESRF GGLDGAFNNAGVTGDMGPIPDMAESNWHKVIAVNLNSGFYAAKHQIPAMRKRGGGSIVFTSSFVGHTIGLPGMGAYAAAK AGLIGITQVLAAEHGPENIRVNALLPGGTMTPMAGDDADFHEVVRGFHALKRMAEPSEIANAALFLLSDHASFVTGSAMI ADGGNSISKL
Specific function: Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=34.136546184739, Blast_Score=138, Evalue=6e-33, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=30.3501945525292, Blast_Score=109, Evalue=2e-24, Organism=Homo sapiens, GI5031737, Length=248, Percent_Identity=31.4516129032258, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=34.5945945945946, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=28.5714285714286, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI33667109, Length=210, Percent_Identity=32.8571428571429, Blast_Score=98, Evalue=6e-21, Organism=Homo sapiens, GI15277342, Length=247, Percent_Identity=33.1983805668016, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI4503817, Length=195, Percent_Identity=31.2820512820513, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI66933014, Length=252, Percent_Identity=30.5555555555556, Blast_Score=86, Evalue=2e-17, Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=29.7071129707113, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI59889578, Length=233, Percent_Identity=30.4721030042918, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=30.241935483871, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=30.4, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI31542939, Length=246, Percent_Identity=28.0487804878049, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI302344755, Length=104, Percent_Identity=38.4615384615385, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4504505, Length=263, Percent_Identity=29.6577946768061, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=31.7948717948718, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI32455239, Length=190, Percent_Identity=32.1052631578947, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI5031765, Length=190, Percent_Identity=32.1052631578947, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI4503301, Length=259, Percent_Identity=27.7992277992278, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=30.2325581395349, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI109715829, Length=241, Percent_Identity=25.7261410788382, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI40254986, Length=192, Percent_Identity=32.8125, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI87082100, Length=258, Percent_Identity=36.4341085271318, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI1787526, Length=249, Percent_Identity=34.136546184739, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=36.734693877551, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=35.1239669421488, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1786812, Length=261, Percent_Identity=33.3333333333333, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=32.3886639676113, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=31.6205533596838, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=31.4285714285714, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=28.4552845528455, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=29.2181069958848, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=28.9795918367347, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=29.2, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786701, Length=186, Percent_Identity=31.1827956989247, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787820, Length=241, Percent_Identity=24.4813278008299, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787545, Length=258, Percent_Identity=26.7441860465116, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=32.156862745098, Blast_Score=123, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=37.3493975903614, Blast_Score=120, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=30.4, Blast_Score=117, Evalue=6e-27, Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=36.7588932806324, Blast_Score=108, Evalue=2e-24, Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=35.8565737051793, Blast_Score=107, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=31.3653136531365, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=30.8270676691729, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=30.1204819277108, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17544670, Length=271, Percent_Identity=29.8892988929889, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=31.3492063492063, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=31.6793893129771, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI193204405, Length=268, Percent_Identity=32.089552238806, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=30.0751879699248, Blast_Score=91, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=30.2681992337165, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=30.9701492537313, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=30.5882352941176, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=29.3233082706767, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=33.8461538461538, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17563726, Length=261, Percent_Identity=29.8850574712644, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=28.1368821292776, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17536025, Length=254, Percent_Identity=29.1338582677165, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=29.9242424242424, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=30.3703703703704, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=27.6119402985075, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=30.3030303030303, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17564282, Length=215, Percent_Identity=31.6279069767442, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17508895, Length=172, Percent_Identity=30.8139534883721, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17538486, Length=267, Percent_Identity=29.5880149812734, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17508651, Length=247, Percent_Identity=25.5060728744939, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=29.5275590551181, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=28.1481481481481, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203117, Length=178, Percent_Identity=34.8314606741573, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193203115, Length=178, Percent_Identity=34.8314606741573, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17507613, Length=212, Percent_Identity=27.3584905660377, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI32563809, Length=212, Percent_Identity=27.3584905660377, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=28.0632411067194, Blast_Score=86, Evalue=5e-18, Organism=Saccharomyces cerevisiae, GI6322861, Length=190, Percent_Identity=30, Blast_Score=80, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6322227, Length=203, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI21355319, Length=245, Percent_Identity=30.2040816326531, Blast_Score=117, Evalue=7e-27, Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=34.5238095238095, Blast_Score=114, Evalue=5e-26, Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=35.4838709677419, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=33.8645418326693, Blast_Score=108, Evalue=3e-24, Organism=Drosophila melanogaster, GI24643142, Length=255, Percent_Identity=33.7254901960784, Blast_Score=107, Evalue=6e-24, Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=33.1983805668016, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=34.8178137651822, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24644337, Length=253, Percent_Identity=35.9683794466403, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=31.6326530612245, Blast_Score=87, Evalue=8e-18, Organism=Drosophila melanogaster, GI116007236, Length=231, Percent_Identity=28.1385281385281, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI28571387, Length=236, Percent_Identity=28.3898305084746, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI281364494, Length=238, Percent_Identity=28.1512605042017, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI18859837, Length=252, Percent_Identity=29.3650793650794, Blast_Score=78, Evalue=4e-15, Organism=Drosophila melanogaster, GI21357673, Length=248, Percent_Identity=29.0322580645161, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI116007238, Length=174, Percent_Identity=30.4597701149425, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI21356301, Length=206, Percent_Identity=28.1553398058252, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574402, Length=194, Percent_Identity=28.8659793814433, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24584744, Length=194, Percent_Identity=28.8659793814433, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI161076933, Length=194, Percent_Identity=28.8659793814433, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24584748, Length=194, Percent_Identity=28.8659793814433, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17737361, Length=228, Percent_Identity=28.0701754385965, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24648693, Length=188, Percent_Identity=27.1276595744681, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355889, Length=188, Percent_Identity=27.1276595744681, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007234, Length=232, Percent_Identity=27.1551724137931, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24641232, Length=232, Percent_Identity=25.4310344827586, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 25656; Mature: 25656
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLNGKTIIITGASSGIGAAAARIFAAEGANVVLGARRAELLEQITKDISAHRGEAVFLA CEECCCEEEEECCCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEEEE GDVEDSAYAADLVKLAESRFGGLDGAFNNAGVTGDMGPIPDMAESNWHKVIAVNLNSGFY ECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEE AAKHQIPAMRKRGGGSIVFTSSFVGHTIGLPGMGAYAAAKAGLIGITQVLAAEHGPENIR EHHHCCCHHHHCCCCEEEEECCCHHHHCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCEE VNALLPGGTMTPMAGDDADFHEVVRGFHALKRMAEPSEIANAALFLLSDHASFVTGSAMI EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHEEEEEECCCHHHCCCEEE ADGGNSISKL ECCCCHHCCC >Mature Secondary Structure MLLNGKTIIITGASSGIGAAAARIFAAEGANVVLGARRAELLEQITKDISAHRGEAVFLA CEECCCEEEEECCCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEEEE GDVEDSAYAADLVKLAESRFGGLDGAFNNAGVTGDMGPIPDMAESNWHKVIAVNLNSGFY ECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEE AAKHQIPAMRKRGGGSIVFTSSFVGHTIGLPGMGAYAAAKAGLIGITQVLAAEHGPENIR EHHHCCCHHHHCCCCEEEEECCCHHHHCCCCCCCHHHHHHCCHHHHHHHHHHCCCCCCEE VNALLPGGTMTPMAGDDADFHEVVRGFHALKRMAEPSEIANAALFLLSDHASFVTGSAMI EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHEEEEEECCCHHHCCCEEE ADGGNSISKL ECCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7515041; 12450824 [H]