| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is yceA [C]
Identifier: 114797057
GI number: 114797057
Start: 2870366
End: 2871316
Strand: Reverse
Name: yceA [C]
Synonym: HNE_2710
Alternate gene names: 114797057
Gene position: 2871316-2870366 (Counterclockwise)
Preceding gene: 114799136
Following gene: 114797211
Centisome position: 77.5
GC content: 63.83
Gene sequence:
>951_bases ATGACCGTCCAGATTGCCGCCCTCTACAAATTCTTCCGCTTCCCGGACTATGCCACGCGCCGCCAGGAGCTCGCGCAGAC GCTGTGCGGCCTTGGCATCAAGGGCTCGCTGCTGGTGGCCGAGGAAGGCCTCAACGGCACCCTCGCCGGCACCCCCGAAG CCATCGGCAAAGCCCTCGACACCCTGCGCACCTTGCCGGGCGCCGAAACGCTGGAGGCGAAGTTCTCCGAAGCCGACGAG ATGCCCTTCCTGCGCCTCAAGGTGCGCCTGAAGCGCGAGATCGTCACCATGGGCGTGCCCGGCACCGACCCCAATGATCT CGTCGGCACCTATGTGAAGCCGCAGGACTGGGACGCGCTGATCTCAGACCCCGACACCGTGCTGATCGACACCCGCAACG ATTACGAAGTCGCCATCGGCACCTTTGAAGGCGCCATCGACCCACAGACTGAAACCTTCCGCGAGTTTCCAGACTGGTTC CGCGAGTTCCGCGCCAAACTCGAAGCCGAAGGCCGCAAGCCCAAGATCGCCATGTTCTGCACCGGCGGCATCCGCTGCGA GAAGGCGACGAGCTTTGTGAAGGCCGAGGGCATCGACGACGTGTTCCACCTGGAAGGCGGCATCCTCAAATATCTCGAGA CCGTGCCCCCGGAGGGCAGCCTCTGGCGCGGGGAATGTTTCGTGTTTGACGAACGTGTCTCGGTTTGTCCCGATTTGTCA CCGGGCAGTCACGTCCTGTGTCATGCCTGCGGCCATCCTGTCTCGGAAGCGGCGCGGGCTGACCCGGCTTATGTCGAGGG CGTGTCGTGTCCGCACTGCCTTGATAAGATGACAGAATCCCAGCGCGCCCGCTTCGCCGAGCGCCAGAAACAGATCGACC TCGCCAAAGCGCGGGGAGAGGCCCATGTCGGCCCGCGCCCGCCGAAAAAGGCTGCGGAAAAACCCGTTTAA
Upstream 100 bases:
>100_bases GCCCCACGCCGGGCCCAAGTTTTACTGACCGGCAGGGGCTTTGCGCCCATAGGGGATTCCCCCGTTTTCCCGCCCGCCGC CTTCTGTCATAAGGCGGGCC
Downstream 100 bases:
>100_bases TTCCAGGGATTAAACCGCCGCGGAATCGCCGGCGGCGTACCCTCCTCATCGCCCTCATCCCGGCTTTCCGGCAGCGGCGG CAGCTCCGGCTCATCGTCCA
Product: rhodanese domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 316; Mature: 315
Protein sequence:
>316_residues MTVQIAALYKFFRFPDYATRRQELAQTLCGLGIKGSLLVAEEGLNGTLAGTPEAIGKALDTLRTLPGAETLEAKFSEADE MPFLRLKVRLKREIVTMGVPGTDPNDLVGTYVKPQDWDALISDPDTVLIDTRNDYEVAIGTFEGAIDPQTETFREFPDWF REFRAKLEAEGRKPKIAMFCTGGIRCEKATSFVKAEGIDDVFHLEGGILKYLETVPPEGSLWRGECFVFDERVSVCPDLS PGSHVLCHACGHPVSEAARADPAYVEGVSCPHCLDKMTESQRARFAERQKQIDLAKARGEAHVGPRPPKKAAEKPV
Sequences:
>Translated_316_residues MTVQIAALYKFFRFPDYATRRQELAQTLCGLGIKGSLLVAEEGLNGTLAGTPEAIGKALDTLRTLPGAETLEAKFSEADE MPFLRLKVRLKREIVTMGVPGTDPNDLVGTYVKPQDWDALISDPDTVLIDTRNDYEVAIGTFEGAIDPQTETFREFPDWF REFRAKLEAEGRKPKIAMFCTGGIRCEKATSFVKAEGIDDVFHLEGGILKYLETVPPEGSLWRGECFVFDERVSVCPDLS PGSHVLCHACGHPVSEAARADPAYVEGVSCPHCLDKMTESQRARFAERQKQIDLAKARGEAHVGPRPPKKAAEKPV >Mature_315_residues TVQIAALYKFFRFPDYATRRQELAQTLCGLGIKGSLLVAEEGLNGTLAGTPEAIGKALDTLRTLPGAETLEAKFSEADEM PFLRLKVRLKREIVTMGVPGTDPNDLVGTYVKPQDWDALISDPDTVLIDTRNDYEVAIGTFEGAIDPQTETFREFPDWFR EFRAKLEAEGRKPKIAMFCTGGIRCEKATSFVKAEGIDDVFHLEGGILKYLETVPPEGSLWRGECFVFDERVSVCPDLSP GSHVLCHACGHPVSEAARADPAYVEGVSCPHCLDKMTESQRARFAERQKQIDLAKARGEAHVGPRPPKKAAEKPV
Specific function: Unknown. [C]
COG id: COG1054
COG function: function code R; Predicted sulfurtransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 rhodanese domain [H]
Homologues:
Organism=Homo sapiens, GI111038120, Length=238, Percent_Identity=33.6134453781513, Blast_Score=115, Evalue=4e-26, Organism=Escherichia coli, GI1787294, Length=279, Percent_Identity=32.258064516129, Blast_Score=142, Evalue=3e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001763 - InterPro: IPR020936 [H]
Pfam domain/function: PF00581 Rhodanese [H]
EC number: NA
Molecular weight: Translated: 34858; Mature: 34727
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVQIAALYKFFRFPDYATRRQELAQTLCGLGIKGSLLVAEEGLNGTLAGTPEAIGKALD CEEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHH TLRTLPGAETLEAKFSEADEMPFLRLKVRLKREIVTMGVPGTDPNDLVGTYVKPQDWDAL HHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCHH ISDPDTVLIDTRNDYEVAIGTFEGAIDPQTETFREFPDWFREFRAKLEAEGRKPKIAMFC HCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE TGGIRCEKATSFVKAEGIDDVFHLEGGILKYLETVPPEGSLWRGECFVFDERVSVCPDLS CCCEEEHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCCEECCEEEEEECCHHHCCCCC PGSHVLCHACGHPVSEAARADPAYVEGVSCPHCLDKMTESQRARFAERQKQIDLAKARGE CCCCEEEHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AHVGPRPPKKAAEKPV CCCCCCCCHHHCCCCC >Mature Secondary Structure TVQIAALYKFFRFPDYATRRQELAQTLCGLGIKGSLLVAEEGLNGTLAGTPEAIGKALD EEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHH TLRTLPGAETLEAKFSEADEMPFLRLKVRLKREIVTMGVPGTDPNDLVGTYVKPQDWDAL HHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCHH ISDPDTVLIDTRNDYEVAIGTFEGAIDPQTETFREFPDWFREFRAKLEAEGRKPKIAMFC HCCCCEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE TGGIRCEKATSFVKAEGIDDVFHLEGGILKYLETVPPEGSLWRGECFVFDERVSVCPDLS CCCEEEHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCCCEECCEEEEEECCHHHCCCCC PGSHVLCHACGHPVSEAARADPAYVEGVSCPHCLDKMTESQRARFAERQKQIDLAKARGE CCCCEEEHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AHVGPRPPKKAAEKPV CCCCCCCCHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA