Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114565160

GI number:

Start: 4781134

End: 4783170

Strand: Reverse

Name: Not Available

Synonym: Sfri_4010

Alternate gene names: NA

Gene position: NA

Preceding gene: 114565162

Following gene: 114565159

Centisome position: NA

GC content: NA

Gene sequence:

>2037_bases
ATGTTAAAGTTGAACGTTATTTTTTATTCTGTGCTATTGGCATGCTTTGCTACATCTACAGCTACTGCCGATGAATCAAA
TTCTTTCGATCTAAGTCTACAAGAGTTACTGAATGTTGAGGTGACTTCGGTATCAAAACAAAAGCAGCCTTTATCGAATT
CACCCGCTGCAATCTATGTCATCACAAGCGAACATATACGTAATTCTGGTGCTACTTCTATCCCGCAAGTACTTCGAGAT
GTGCCAGGGCTGCATGTCGGGCAGATTGACTCTCAAAAGTGGGCCATCAGTAGCCGTGGTTTTAATGGGCGCTACAACAA
CAAATTACTGGTATTGATGGATGGCCGAACCCTTTATTCTCCAATATTTTCAGGTGTCTACTGGGAGGTTCAGGATACAC
TGATGGCCGATATTGAACGCATAGAAGTTATACGCGGGCCTAGCGCGGCAATGTGGGGCGCCAATGCAGTAAACGGTGTG
ATTAATATTATTACCAAACACAGTGCTGATACATCTGGTGGTTATGCAGAATTGGGGGCTGGCGATTATGAGCAAGGATT
TGCAGGTTTTCGTTATGGTTCCACATTATCAGATAATGCAACATCAAGAGTGTATGTAAAAGGCCATAGCAGAGACTCGC
TTGAGTATAATTCGCAAGATCTCGATAGCGGTCTTGCGGAGCAATTAGCCACTGTTGATAAAGACAACGATTGGATGCAT
CTTCAAGTGGGAGGCCGCGTTGATATGGAGCTTGATACGGGCACAAGCCTTATGTTGAGCAGTGATGTGTACCGCACTGA
AATGCAGCAGACCTCTTATTACCCTTCATTAGTTGGTCCGTCATATCGTGACTTTAATAGTAATGACATCAACAGCGATG
GCTTTAATTTATTATCAAAACTCACCAAAGCGTTATCGCCAACCTCTCAATATAGCCTTCAAGCTTACTACGATTATGCA
AAAAGAGACGATGATTGGTATGGGTTTAGTAGTGAAACGGTTGATGTTGATTTTCAGCATCAGCTACTTGTTGGACAAAA
TCATAATATTATCTGGGGACTCGGTTACCGCTTTATTCAAGATGATTTCGACCAAAGCACTATTATTGTAAGTAGCGAGT
CAGAATCAACTCGAACCAATTTGTGGAGCGCATTTATTCGTGATGAAATTACGTTAGTTGATGATGAGTTGTGGTTGACG
CTAGCATCACGTTTCGAACACTATGACTACACAGGCTTTGAGGTTCAACCGAATGCTCGCCTGATGTGGCAGTTGAATAA
AAAAAATAATCTGTGGGCCTCTGTTGCACGCGCAATCAGAACTCCGTCGCGGATAGAAAATAATCTATCGGTGAACTCAC
AAATCATACCGCCTTCAGTTCAGTCACCATTGGTTAGTATATGGGTGGCTGGTAACGAGGATTATAAATCTGAAGTCATC
ATTTCGTATGAGGTAGGTTATCGATTTACGCCCGCTAAAAAATGGTCATTTGATTCAACAATTTTTTATAACGATTATGA
CCAATTGCGCAATGCTCCAGCCGGTGCAACAGATTTCAGCACATTTCCCAATTACATTTCGCAATACTTAACATTCAGTA
ATGATCTTGATGGATATAACTATGGATTCGAGCTCTCATCTCAGTGGGCTGCAACTGATACTATCCAATTCAAAGTAAAT
TATAGTTTTACTCAAAATGAATTTGGTGCCAGTCAAAGTCAAAATACTGATGCCCCAGAGCATATGATATCGACAATGAT
GGATTGGAGCATTAGCGATAATGTTGATTTTAATCTAGTTTGGCGTGTTATTGATGAAGCTTACGTATTGAATATCAATG
ACCTTAGTACTAAGGAAATTGATAGCTATAGCGGGGTTGATTTAGGACTGCACTGGAAGGTTAAGCCTGATGTCATGTTA
TCAGCGTTCGGGAAAAATTTACTTCATCCTGCAAACCTTGAGTTTGAAGGAGAAAGTTACCAACTCCCTTATCGTGTGGG
ACCAAGTTATTATATTAAAGCTACTTTGACCTTTTAG

Upstream 100 bases:

>100_bases
ATCGTGTAAGTTAATCATGTAAATCAATTGTGAACTTTTTTTGAGTCTTTAATCAGCAAGCTCTCACAATTGTCGTTAGC
TTAGTGAGGGGTTGTTGGAA

Downstream 100 bases:

>100_bases
GGTAGCAACATTGAAAAACTCAAATTTAAGTCGACAGTTACTGTATTCATTATTGGTCGTGGGAGCTATTTTGCTTCCGC
GAGTCTCTATGGCGCAGAAC

Product: TonB-dependent receptor, plug

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>678_residues
MLKLNVIFYSVLLACFATSTATADESNSFDLSLQELLNVEVTSVSKQKQPLSNSPAAIYVITSEHIRNSGATSIPQVLRD
VPGLHVGQIDSQKWAISSRGFNGRYNNKLLVLMDGRTLYSPIFSGVYWEVQDTLMADIERIEVIRGPSAAMWGANAVNGV
INIITKHSADTSGGYAELGAGDYEQGFAGFRYGSTLSDNATSRVYVKGHSRDSLEYNSQDLDSGLAEQLATVDKDNDWMH
LQVGGRVDMELDTGTSLMLSSDVYRTEMQQTSYYPSLVGPSYRDFNSNDINSDGFNLLSKLTKALSPTSQYSLQAYYDYA
KRDDDWYGFSSETVDVDFQHQLLVGQNHNIIWGLGYRFIQDDFDQSTIIVSSESESTRTNLWSAFIRDEITLVDDELWLT
LASRFEHYDYTGFEVQPNARLMWQLNKKNNLWASVARAIRTPSRIENNLSVNSQIIPPSVQSPLVSIWVAGNEDYKSEVI
ISYEVGYRFTPAKKWSFDSTIFYNDYDQLRNAPAGATDFSTFPNYISQYLTFSNDLDGYNYGFELSSQWAATDTIQFKVN
YSFTQNEFGASQSQNTDAPEHMISTMMDWSISDNVDFNLVWRVIDEAYVLNINDLSTKEIDSYSGVDLGLHWKVKPDVML
SAFGKNLLHPANLEFEGESYQLPYRVGPSYYIKATLTF

Sequences:
NA

Specific function: NA

COG id: COG4771

COG function: function code P; Outer membrane receptor for ferrienterochelin and colicins

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA