Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114565155

GI number:

Start: 4773208

End: 4775298

Strand: Reverse

Name: Not Available

Synonym: Sfri_4005

Alternate gene names: NA

Gene position: NA

Preceding gene: 114565156

Following gene: 114565154

Centisome position: NA

GC content: NA

Gene sequence:

>2091_bases
ATGTCGTTAAATACACTTCAAGATGTGGTATTAATCGTTGATGATGATCCCGTCATTCGAATTCTGATGCGTCGGGCACT
AAGCCATTCTGTTGGCAATATTATTGAGGCCAGCAGTGGCGAAGAGGCGATACAGCTTTTTTCCGAACATACACCAGATT
TAATATTGCTCGATGTGTCGATGGACAAAATGAATGGCTTTGAATGCTGTTCAGTGATCCGTTCATTACCCGAAGGGGAT
AATGTCGCCATTATTATGGTGACAGCATTAGATCAACCTCAAGACATTCAAAAAGCCTTCGATGTGGGTGCAACAGATTT
CATGACCAAGCCGGTTAAGTGGCCGTTGCTGAGTCACCGCATCCATTATGTGCTTAAAGCCAATAAAACAATCAAAGAGC
TAACCAAAAGTAAAAACAAACTTGCCAGAGCACAAAGCATCGCCCACTTGGGATCATGGGAGTGGGACTTTACATCCGAT
AAGTTAGACTGCTCTGATGAAGTTTATCGTATGTTGGGGATGCAACCTCAAGAGATAGACATTACGTTTTCTAAATTGCT
AGAAATCATCCACCCAGATGATCGTGAATTTTTAAAATTAACGGTTAAAACAGCGTTAAAGCATCGGCAACCCTATGATA
TTGAATATCGTGTGTTACATGGTAGTGGTGAGATTATTACCCTACATGACCGAACAGATATCACTTATGATTTTGGTGAA
CCGCGAATTAATGGCACCTTGCATGATATTTCAAGCCGCAAAAAATCAGAGCAAGAAATCGCTTATTATGCCTTTTACGA
TACGTTAACGGATCTACCGAACAGGCGTAAATTTCTGTTGCAGTTAGACTCTGCAATTGCTTCAGCCAAACGTCACTCAA
CAAAATTAGCATTACTATTCATTGATTTAGATCATTTCAAAAGAATAAATGATACCTTGGGACACAAAGCCGGTGATGAG
TTGCTATGCGAAACGGCGACACGGATAAAAAGTTCTGTACGTATTTCAGATGAGCTTAGTGTTGGCAGCCGGGTTGATTA
TGAAAATGAACATCTTGCCCGTTTGGGCGGCGATGAATTCACTTTACTTTTATGTGAGTTAGAAGCGTTTGATAATGTCG
CTATTATTGCTCAGCGAGTGCTTGATGCGCTTTCGAAACCCTTTGTTATTCAGGGGCAACAAACATTTATTTCGGCCAGC
ATCGGTATTTCTTTTTATCCCGACGACGGTGAATCCGGCGATATTTTACTGCAGCATGCAGATACTGCCATGTATGAAGT
GAAACACAACGGCAAAAACGGTTACCAACTTTTTTCACATGAAATGCATAAATCATTAATGGATAGGCTCAAAATTGAAG
TCGAACTGCGAGAGGCTATAAGGTTAGGAGATCAGTTTGTACTTTATTACCAACCACAAATTGACTCAGCAAATGACAAC
ATTGTTGGATACGAAGCATTATTGCGTTGGAACCATCCAACAAGAGGCTTGTTAACACCGATAGATTTTCTCGCGATTGC
TGAAAGTAGCGGCTTGATTATCCCTATTGGAGAATGGGCTTTGCTTGAAGCTTGTAGCAAAGCGAAACAGATACATATTG
CAGATGCCAATTTTCAGCGCATGGCTGTCAATCTATCTGCATTGCAATTCAACCATGCAAATATTTTTGACCACGTGAAA
CGTGCACTTGTTGAAACAGGTTTACCACCAAATCTACTTGAGCTTGAAATTACAGAATCAGCCATCATCAGTAACGTCGA
TGAGGCGATTGCTTTGCTATTTATGTTAAAAAAACTAGGTGTGAAGTTAGCTATTGATGATTTTGGAACCGGCTACTCTT
CATTAAACTACTTAAAGAGTTTCCCCATTGATACATTAAAAATTGATAAGTCGTTTGTAGATGGAATTGTGAGCAATCAA
AAAGATGCCGCAATCGCTCGCACAATCGTGCAGTTAGCACTTAATTTAGAGCTCAGTACCATCGCTGAAGGTGTCGAGTA
TATAGAGCAGCATGAGTTACTTAAGGCTATGGGATGTACTAATTTACAAGGTTATTTGTATAGTAAACCCTTACCTCCGG
AAATGGTTTAA

Upstream 100 bases:

>100_bases
GTGGTAAGTTGAGCGATGCCAATCATCTCTCAGACACATTATTGCCTGTGTTTGAACAAACTAAAGAGGCAATATTGCTA
AAGTTAGAGAGGCTTGTCTA

Downstream 100 bases:

>100_bases
AGTGATATGTAACAGGCGCTCAAAATTGGCCATTAACGTAAATTGGTGGCAGTAAAAAGGGGCCGATTTAAATAAGCACG
CCAAGAACTTTTTAATATCA

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>696_residues
MSLNTLQDVVLIVDDDPVIRILMRRALSHSVGNIIEASSGEEAIQLFSEHTPDLILLDVSMDKMNGFECCSVIRSLPEGD
NVAIIMVTALDQPQDIQKAFDVGATDFMTKPVKWPLLSHRIHYVLKANKTIKELTKSKNKLARAQSIAHLGSWEWDFTSD
KLDCSDEVYRMLGMQPQEIDITFSKLLEIIHPDDREFLKLTVKTALKHRQPYDIEYRVLHGSGEIITLHDRTDITYDFGE
PRINGTLHDISSRKKSEQEIAYYAFYDTLTDLPNRRKFLLQLDSAIASAKRHSTKLALLFIDLDHFKRINDTLGHKAGDE
LLCETATRIKSSVRISDELSVGSRVDYENEHLARLGGDEFTLLLCELEAFDNVAIIAQRVLDALSKPFVIQGQQTFISAS
IGISFYPDDGESGDILLQHADTAMYEVKHNGKNGYQLFSHEMHKSLMDRLKIEVELREAIRLGDQFVLYYQPQIDSANDN
IVGYEALLRWNHPTRGLLTPIDFLAIAESSGLIIPIGEWALLEACSKAKQIHIADANFQRMAVNLSALQFNHANIFDHVK
RALVETGLPPNLLELEITESAIISNVDEAIALLFMLKKLGVKLAIDDFGTGYSSLNYLKSFPIDTLKIDKSFVDGIVSNQ
KDAAIARTIVQLALNLELSTIAEGVEYIEQHELLKAMGCTNLQGYLYSKPLPPEMV

Sequences:
NA

Specific function: NA

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA