Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 114564732

GI number:

Start: 4250827

End: 4253511

Strand: Reverse

Name: Not Available

Synonym: Sfri_3580

Alternate gene names: NA

Gene position: NA

Preceding gene: 114564733

Following gene: 114564731

Centisome position: NA

GC content: NA

Gene sequence:

>2685_bases
ATGAAAACCAAGCCGAGTTTTACCGTTAATAAGTTAAGTCTTGCCATTATCTCTGTGATTTCTGCGGCGACACTATTAAC
AGCTACCCCCGTATACTCGCAAGAACCAGCGCCTGTTCGTGATCCTGGTGAAGTGATTCCAATTGAACCGATAGAAGTGA
TTTCAGTTACTGGGCGTTTACGTAGCTCTGCATCGGAAGCAACTGAAGAACGTCGTGAACAAATTGCTGTAGCCGATATT
ATGGGCTCAGAACAAATTTCAAGAACCGGTGACGGTGATGCAGCCGCAGCGCTTCGTCGTGTGACAGGTTTAACCTTAAA
AGATGGCAAATTCATTTATGTTCGTGGCTTAGGTGAGCGTTATTCAAGTACCTCACTGAATGGCGCGACAGTGCCATCGC
CAGACCCAACCCGTAACGTAGTACCTTTAGATATGTTTCCTGCATCGATCATTGAATCATTATCGGTGCAAAAGTCTGCC
TCAGCTAATTCACCTGCCGCATTTGGTGGCGGGCATGTTGATATTCGCACTAAATCAATTCCGGCCGACTTCTTCTTTAA
AGCGTCAGTAGGCGGTCGTTATAACACCAATGACTCAAATGACAGCTACACCTACAACGGTGGTGGCGATGATTGGACTG
GCCAAGACGATGGCACTCGCAGCATGCCAAGCAACATTAATAACACCATTAATCAATATGGTGGAATTAGCCCAATTGAT
ATCGTCAGCAACTCTAATGGCGCTATAAATTACCCAGCAGCACAAAAAGTTAACCGCGAACTAGCACTAGACATGTACCG
CGATATGACGGTACACAGCCAAAGTACAGACCCTGCAATGCGCGGCGATATCGCCATTGGTGATCGTTGGGACATTACCG
ACGATATTATCTTTGGTGCATTGTCAGCCGTGTCTTACAAGAAGCAAGCTGAAAACTACACTAAACGTGAAGTTGAGCTT
GATGGTGATAGCAGCCAAGTACAAGTTGAAAACCAGAAAGACATCGTTGGTACCGACTCAATAGTCCAAGTGTCTGGCAT
GCTTAACTTAGGCTTAGAGATTGGCTACAACCATAAAATCGAAACCTTCACTACTTACCTGCAAGACACTTCAGATGATG
TGTCTATGGGGATTGAAGAAACCATCGATACTTTGGGTGAGCCAAATGCACTGCAAGTTTACGCCATTGATTATGAAGAA
CGTTCGCTTATCAGTAACCAAATTAAAGGTCATCATTTTATTGAATATTTGAATGACGCTGAATTTAATTGGAAGTTCTC
CGATGCGCGCTCAGAGCGTTATGCACCAAATGAAGTGTCGTATACCTACAACGTGATTTTAGACGACAGCAACCAGTTAT
TATCACGTAACCTCAATACTCAAGATGCACCCAAGTATGTCTACAGTCGCCTAGAAGATGATAGCCAAAACTATGCTTGG
GACTTTATGTATCCAATTAATCTAGACGGCGCCGTGGTTAAACTGACTACCGGCTATGAATACTTTGAGCGTACTCGCGA
AAGCTATGCAACTCGCTTAGGGTTTGATGTCGATTTAAGTCCAACCGATGCCAATGGCGCTATTTTAGCGGGTGATTTTG
ATGAGATTTTCTCTGATAAAAACATTACCGACAATACCTTAGGGCTAGAGCTGAAAGACGCATCAACTGACACTGAAGAC
TACATTGCCGCCGAGAAAAACGACGCTGCATTTGTGAGCATGGACATCGACTTTGACGATGTTTGGCGCGTCTATGCTGG
TATTCGTTATGAAGATTTTCGTCGCGTCACTTTGCCTATCGACCCCAATGGTGAAATATCAGATGAAGGTGGTCGTTATC
AGTTATCTGACTACGTGATAGCAGAAGACGGTTGGTTCCCATCGTTGTCATTAACCTGGAAACAAACCGACACCACCCAA
TGGCGTTTTGGCGCGAGTAAAACCATTGTACGACCAGATCTACGTGAAGTGTCACCGGTTCGATTCCAAGATCCAGTTAC
TGGTTTTGACTTCTTCGGTAACCCAGAGTTAAAGAGTTCAGACATTCTTAACTTAGATTTACGTTGGGAATACTATTCTG
ATTCGGGTAATAATTTCAGCATGGGCGCATTCTATAAAGATGTAGATGCACCGATTGAGCCGATTCAACGTATTTCAGAA
GCAGGGCGTCAGCTCAAGTTTTATAACGCGCAGTCGGGTTATGTGTACGGTCTTGAAACCGAGTTCTTACAAGAGCTTGA
GTTTTTGGGTCGCGATGGCAGCATTTGGGAAGACTTCTTTGTTGCGGGTAACTTAACTCTAGGTGACTCAGAAATCGATA
TCGCTGCTAACGGCGAAATTGACCCAACCAATAAAACGCGCCGCATGACCGGACATTCACAATGGGTGGCTAACTTACAG
TTAAGTTACGACTCGTCAGACAGTTATCACAGTGCCACATTAGTGTATAACGTGTTTGGTGAACGTATTGCTTATGGTGG
CCGTGGTGGTTTAGACGATGTATTTGAAAAGCCATTCCATAGCCTTGATTTTACCTATAGTTTCTTCCCGACAGATAGCG
TTACGGTAAAAGTAAAAGCGAAAAATATCTTAGGTGAAACCACTGAATACGAACAGCAAGATCTGCAAGTGTACGCTAAA
GACCCTGGCACAGAGTTCACTTTGCAATTTAGCTATGAGTATTAA

Upstream 100 bases:

>100_bases
TTACTTTCCACAGTAATCACCTCGATAACCTTAATCTGTGACCTATTAATAGCCGCCCGCAAGGGCGGTTATCTCTGAAC
CGCATACAGGATAGTTAAGT

Downstream 100 bases:

>100_bases
TAGGTTTAATCGTTACGTGTAATAGTGCGTTCAAGAGTTACGTATAAAAGAGTACTTGTTTTTAGTGGTTTTTATTCATC
ATTTCAATCGCTAAAAATGT

Product: TonB-dependent receptor, plug

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>894_residues
MKTKPSFTVNKLSLAIISVISAATLLTATPVYSQEPAPVRDPGEVIPIEPIEVISVTGRLRSSASEATEERREQIAVADI
MGSEQISRTGDGDAAAALRRVTGLTLKDGKFIYVRGLGERYSSTSLNGATVPSPDPTRNVVPLDMFPASIIESLSVQKSA
SANSPAAFGGGHVDIRTKSIPADFFFKASVGGRYNTNDSNDSYTYNGGGDDWTGQDDGTRSMPSNINNTINQYGGISPID
IVSNSNGAINYPAAQKVNRELALDMYRDMTVHSQSTDPAMRGDIAIGDRWDITDDIIFGALSAVSYKKQAENYTKREVEL
DGDSSQVQVENQKDIVGTDSIVQVSGMLNLGLEIGYNHKIETFTTYLQDTSDDVSMGIEETIDTLGEPNALQVYAIDYEE
RSLISNQIKGHHFIEYLNDAEFNWKFSDARSERYAPNEVSYTYNVILDDSNQLLSRNLNTQDAPKYVYSRLEDDSQNYAW
DFMYPINLDGAVVKLTTGYEYFERTRESYATRLGFDVDLSPTDANGAILAGDFDEIFSDKNITDNTLGLELKDASTDTED
YIAAEKNDAAFVSMDIDFDDVWRVYAGIRYEDFRRVTLPIDPNGEISDEGGRYQLSDYVIAEDGWFPSLSLTWKQTDTTQ
WRFGASKTIVRPDLREVSPVRFQDPVTGFDFFGNPELKSSDILNLDLRWEYYSDSGNNFSMGAFYKDVDAPIEPIQRISE
AGRQLKFYNAQSGYVYGLETEFLQELEFLGRDGSIWEDFFVAGNLTLGDSEIDIAANGEIDPTNKTRRMTGHSQWVANLQ
LSYDSSDSYHSATLVYNVFGERIAYGGRGGLDDVFEKPFHSLDFTYSFFPTDSVTVKVKAKNILGETTEYEQQDLQVYAK
DPGTEFTLQFSYEY

Sequences:
NA

Specific function: NA

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA