Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114564717

GI number:

Start: 4233543

End: 4235594

Strand: Reverse

Name: Not Available

Synonym: Sfri_3565

Alternate gene names: NA

Gene position: NA

Preceding gene: 114564718

Following gene: 114564716

Centisome position: NA

GC content: NA

Gene sequence:

>2052_bases
ATGAGCGATCCAACCCAAATTAACGAACCAGAGCAAGGCTTAAGTGCCGATACTCGCAACTGGCCAAAAGCCTTGTTTGC
AGTAGCATTGATTTTTTCTATTTTCCAAATTACCACCGCGGCATTTCATCCAGTTTCGACACAAGTATTGCGCGCCGTAC
ACGTGGGCTTTTTATTATTAGTGGTGTTTATTAGCTACCCAGGTATAGGCAAGAGTCAGCCATGGCAACCTTTGGCATGG
ATACTCGGTTTAGCGGGTATGGCTACCGCGGTTTATCAATGGGTGTTCGAAGCAGACTTAATTCAACGTTCTGGTGATTT
AACCCAAAATGACATGATTATTGGTGTGGTGTTAGTCGCTTTAGTGTTTGAAGCCGCAAGACGAGTGATGGGAATAGCCC
TGCCGATTATTTGTGGTATTTTTTTGGCCTATGGTTTATTTGGCGAGTATTTACCCGGTGAATTGATGCATCGAGGTTAT
GGTTTCGATCAAATAGTTAACCAGTTGGCCTTTGGTACCGAAGGCTTATATGGCACGCCAACTTATGTATCCGCGACCTA
TATTTTCTTGTTTATTCTGTTTGGTGCCTTTTTAGAGCAAGCAGGCATGATCCGCTTATTTACCGACTTTGCTATGGGCT
TATTTGGCCATAAAGTGGGTGGGCCTGCAAAAGTGTCGGTGGTGTCTTCAGCACTCATGGGCACCATTACCGGTTCGGGA
GTTGCCAATGTGGTCACCACCGGCCAGTTTACTATTCCGTTAATGAAGCGCTTTGGTTATCGGTCTGCTTTTGCGGGTGG
GGTAGAAGCCACATCCAGTATGGGCAGCCAAATTATGCCGCCGATTATGGGCGCCGTGGCCTTTATTATGGCAGAAACCA
TTAATGTGCAATTTATTGAAATTGCTAAAGCAGCGATGATCCCCGCGGTATTGTATTTTTGTTCGGTGTTCTGGATGGTG
CATTTAGAAGCTAAACGCGCCAATTTATCTGGTTTACCTAAAGACCAATGTCCGGATCCGTGGGCAGCTATTAAGTTGCG
TTGGTACTTATTAATTCCACTATTTATTTTGATTGGTTTGTTATTTTCAGGTCGTACACCGCTGTTTTCTGGCATGGTTG
GCTTAGCACTCACTGCGATTGTTATTTTAGGTTCGGCCATTATTCTCAATCTATCATCAGCTGCTATGCGGTTTGCTTTT
TGGATAGCGCTAGGGGTGTTATGTGCAGGATTTTTCCAGTTAGGTATAGGGGTGATGTTTGGCGTTATCGCTATGCTGGT
GGTGATTTGTTGGTTTGTTAAAGGTGGCAAAGAAACCCTAACATTATGTGTGCATGCGTTAGTTGAAGGTGCGCGACATG
CAGTACCTGTAGGTATTGCTTGTGCGCTAGTGGGCGTGATTATTGGTGTTGTGTCACTAACCGGTATTGCTTCAACGTTT
GCCGGCTATATTCTGGCTGTCGGCCAAGATAACTTATTCTTGTCTTTAGTGCTGACGATGGTGACGTGTTTGGTATTAGG
TATGGGGATCCCGACAATTCCTAATTACATTATTACCAGCTCAATTGCCGCGCCAGCGTTACTGGATTTAGGCGTACCGT
TAATTGTGTCGCACATGTTTGTGTTTTATTTTGGCATTATGGCAGACCTTACACCACCCGTTGCCCTGGCGTGTTTCGCC
GCGGCGCCAATCGCCAAAGAGAAAGGCTTAAAAATCAGTTTATGGGCCATTCGCATTGCCATTGCTGGGTTTATTATTCC
GTTTATGGCGGTGTACGACCCTGCGTTAATGCTCCAAAGTGGTGGTGTGCTAGAAACGGTTTATGTGGTCCTTAAAGCGA
CGGTTGCTATAGGTATTTGGGGCGTGATATTTACCGGCTACTTATTACAAAACCTTTATTGGTGGGAACGTGTTTTAGGC
TTTATTGCTGGTGGCAGTTTAATTATGGCGACACCGCTAAGTGATGAGTTAGGCTTTGGTTTGGCACTGGTGTTTATTTT
GCACCACGTATGGCGAGCACGTAAGCTAAAACGTTTAGCGCAGGGCGAATAA

Upstream 100 bases:

>100_bases
CCGTTTTAGATCAAGAGTGACTGATTGAGTCAACGTCATTGTTAATTGACTCATTTTTCTGAGCTGAGGTTATTAGTTGT
AGTAAGTGTCGAGGCATACC

Downstream 100 bases:

>100_bases
TGCTAGGGCTATGTTTGGGTTTAGCAGGCACAATATGGGCTCAAGTGCCTGCTGAACAGATGACATTGTCTTGGACTCAC
ACTATTGAGAAAATTCGTTG

Product: TRAP transporter, 4TM/12TM fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>683_residues
MSDPTQINEPEQGLSADTRNWPKALFAVALIFSIFQITTAAFHPVSTQVLRAVHVGFLLLVVFISYPGIGKSQPWQPLAW
ILGLAGMATAVYQWVFEADLIQRSGDLTQNDMIIGVVLVALVFEAARRVMGIALPIICGIFLAYGLFGEYLPGELMHRGY
GFDQIVNQLAFGTEGLYGTPTYVSATYIFLFILFGAFLEQAGMIRLFTDFAMGLFGHKVGGPAKVSVVSSALMGTITGSG
VANVVTTGQFTIPLMKRFGYRSAFAGGVEATSSMGSQIMPPIMGAVAFIMAETINVQFIEIAKAAMIPAVLYFCSVFWMV
HLEAKRANLSGLPKDQCPDPWAAIKLRWYLLIPLFILIGLLFSGRTPLFSGMVGLALTAIVILGSAIILNLSSAAMRFAF
WIALGVLCAGFFQLGIGVMFGVIAMLVVICWFVKGGKETLTLCVHALVEGARHAVPVGIACALVGVIIGVVSLTGIASTF
AGYILAVGQDNLFLSLVLTMVTCLVLGMGIPTIPNYIITSSIAAPALLDLGVPLIVSHMFVFYFGIMADLTPPVALACFA
AAPIAKEKGLKISLWAIRIAIAGFIIPFMAVYDPALMLQSGGVLETVYVVLKATVAIGIWGVIFTGYLLQNLYWWERVLG
FIAGGSLIMATPLSDELGFGLALVFILHHVWRARKLKRLAQGE

Sequences:
NA

Specific function: NA

COG id: COG4666

COG function: function code R; TRAP-type uncharacterized transport system, fused permease components

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA