Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 114564545

GI number:

Start: 4029981

End: 4032470

Strand: Reverse

Name: Not Available

Synonym: Sfri_3384

Alternate gene names: NA

Gene position: NA

Preceding gene: 114564549

Following gene: 114564531

Centisome position: NA

GC content: NA

Gene sequence:

>2490_bases
ATGTTGTTATCGGGTTTAACCAATACTGTTTATAAAATTCTGATTATTGACGATAATATTCAAAATATATTCATGCTGGA
AGATATTTTGTCGCCTCTTGGCAATATCTTTTTTTCAGAGTCTGGCACTAATGCACTCGCGTTAGTGGATAAAATTAAGC
CTGATGTCATTTTACTCGATATTGAGATGCCTGACATGGATGGATGGGAAGTGTGTCGTACACTCAAAGCTAATCCATTA
TTTAGCGATATTCCAATTATTTTTATTACCGGCCACACAGAACCTGAATTTGAAAGGTTAGCGCTAGAAAGTGGTGGAGT
CGATTTTATTACTAAACCTTTTAACGCTTCTATATGTTGCTTAAGGGTTCATACACAACTTAAATTTAGACAGCAAAATC
AACTGATTATTAAAGCTAAAGAAGAGTTACAACAATTAGTTAATCAAGTCCCTATGCTTATTACTTATTGGGATGATTTA
GGTCAAAATTTATTTAGTAATGACAACACTGGTTTATGGTTTGATAGCTTGGTCGGTGATGTTAAAAACAAGCATATTTC
GACTATTTTTCCTGAAGCGCTCAGCAATGCAATTTTAAATCATCACCGTCATATTACCTCAGATGCATTAAAGTACATTG
TCACCGTCCCTCAAAGTGTTGGTTTGAGTTTTTATGAAGTCTTTCAGTCCAAAATGAAATCAAGTGCTGGAGTCGATGGC
TACTTGGTTACTGTTGTTGACGTCTCTGAAGTAAAGCATGCAAAGCAGGCGCTGTACTCTGAAAAGGAGCGTCTTCGAGT
AACACTCAATTCTATTGGTGATGCTGTTATTGCGACTGACACAAGAGGGCTTATTACTTTTATGAACCCAATTGCGGAGC
GCATGACAGGTTGGCGGTTAAAAGATGCATTACATCAAAAAATTGAAGATGTTATGCATTTGAAAGATTCTGATACTCAG
CAGCCATTATTGAACCCGTTATATTTAGCTCTTCGCGAGCAGCGCATTGTGGCAATGGCGCTAAACAGCCTACTTACTTC
ACGTGGAGGGCATGTTTTTTATGTGGAGGATTCAGCCGCTCCAATCCGTAACGAAAATGGTGAAATGATTGGCGCCATTA
TGGTGTTTCATGATGTGAGTGAAGCGATGGCGATGGCGATGAAAATGAGCCATTTAGCCAACCATGATCAGTTAACTGAT
TTACCTAATCGGATATTACTTCAAGATAGGTTAAGCGTCGCGTGTTCTACAGCAAGATCCTATGGCACCAAAGCTGCTGC
ACTATTAATCGATATTGATCATTTTAAATTCCTTAATGATTCCTTAGGCCACCAATATGGTGATGAGCTCATTTGTATGA
TGGCAAGACGACTCCGCTCGTTAATACCTGCATCGTATACATTGGCGAGATTAGGTGGTGACGAATTTGTGATTTTAATG
AGCGAGACTCGCTCTGTTGAGGCTTCTTCGCAATTAGCATCTACATTAGTTGAAGCGATGCATGAACCTTTTGTTCTTGA
TAATCAGAAGTTTAATGTGTCGATAAGTATTGGTGTTAGTGTGTTCCCAAATGATGCTGTAGATGCCGAGGAATTAATGA
GACACGCGGACGTGGCAATGTACCGTGCCAAACAGGAAGGCCGAAATCGCTTCTGCTTTTTCTCGCATGATTTAGAAAGT
TCGCTTATGGAGCGCCATCATTTAGAGACTCGCTTAAGAAAAGCATTAATTAATGATGAACTTTTTGTGCATTATCAACC
TAAAATTGATTTACAGACAAACATTATTATTGGTGCTGAGGCTCTCGTTAGACTGGCCAATGATGAGGGTGAGCTTATCT
CTCCCGCAGAGTTTATTCCATTAGCGGAAGAGTCCGGTTTAATTATTATGCTAGGTAAACAAGTGCTTAATAAGGCTTGT
GCTGAAGCTAAACGTTGGTTAGAAATGGGCCATACGATTCCTATCTCGGTGAATGTGGCCGCGGCACAGTTTGCTGATCC
CGACTTAGCCGGTATGATCAAGAAAGCACTATTGGACCATAATTTACCGGCGCATTTACTTGAATTGGAAATTACCGAAA
CTGCATTGATGATTGATGCAGCGGACATGCAAAACAAGTTGAGTGAGTTAATATCATTAGGGATTAAGATTGCTATTGAC
GATTTTGGTACTGGTTATTCCAGCTTGGCCTATTTGAAAAAGTTTAATGTTGATGTCATGAAAATTGATATGTCGTTTGT
GAAAGACATGCTCAACAATAAGCACGATTATGAAATTGTGAAGACGATTATTTCATTGGGCAAATCGATGGGGTTAGTGC
TAATTGCCGAAGGTGTTGAAACTAAAGAGCAAAGCCACGCATTAGTTGAATTGGGATGTTTTATGGGCCAAGGTTATTTG
TTTAGTCGCCCACTCAATAGTACAGATTTTGAAGCCTTCATATCGCAGAGCAGCAAATGTGTTAAAGGTATCAATTCCGT
CGATGAATAA

Upstream 100 bases:

>100_bases
AGATGTAAAAAAATTAAGCTATTATAAATGTATGTTGGTTGCAGATAACCTTAAGATTAAATGGATGTTATCTAGCTGAA
AATAAGGGAGTTATTTTTCT

Downstream 100 bases:

>100_bases
GCGGTGGCTTATGCCAGTTAAGCTTGAGCTGTTTTTGAGTGAATAGAAATGAAAAAGCCCCATTGCATCCTTTGCGTTGG
GGCTTTTGTTTGCATTGTCT

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>829_residues
MLLSGLTNTVYKILIIDDNIQNIFMLEDILSPLGNIFFSESGTNALALVDKIKPDVILLDIEMPDMDGWEVCRTLKANPL
FSDIPIIFITGHTEPEFERLALESGGVDFITKPFNASICCLRVHTQLKFRQQNQLIIKAKEELQQLVNQVPMLITYWDDL
GQNLFSNDNTGLWFDSLVGDVKNKHISTIFPEALSNAILNHHRHITSDALKYIVTVPQSVGLSFYEVFQSKMKSSAGVDG
YLVTVVDVSEVKHAKQALYSEKERLRVTLNSIGDAVIATDTRGLITFMNPIAERMTGWRLKDALHQKIEDVMHLKDSDTQ
QPLLNPLYLALREQRIVAMALNSLLTSRGGHVFYVEDSAAPIRNENGEMIGAIMVFHDVSEAMAMAMKMSHLANHDQLTD
LPNRILLQDRLSVACSTARSYGTKAAALLIDIDHFKFLNDSLGHQYGDELICMMARRLRSLIPASYTLARLGGDEFVILM
SETRSVEASSQLASTLVEAMHEPFVLDNQKFNVSISIGVSVFPNDAVDAEELMRHADVAMYRAKQEGRNRFCFFSHDLES
SLMERHHLETRLRKALINDELFVHYQPKIDLQTNIIIGAEALVRLANDEGELISPAEFIPLAEESGLIIMLGKQVLNKAC
AEAKRWLEMGHTIPISVNVAAAQFADPDLAGMIKKALLDHNLPAHLLELEITETALMIDAADMQNKLSELISLGIKIAID
DFGTGYSSLAYLKKFNVDVMKIDMSFVKDMLNNKHDYEIVKTIISLGKSMGLVLIAEGVETKEQSHALVELGCFMGQGYL
FSRPLNSTDFEAFISQSSKCVKGINSVDE

Sequences:
NA

Specific function: NA

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA