Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114564482

GI number:

Start: 3967252

End: 3970488

Strand: Direct

Name: Not Available

Synonym: Sfri_3321

Alternate gene names: NA

Gene position: NA

Preceding gene: 114564481

Following gene: 114564483

Centisome position: NA

GC content: NA

Gene sequence:

>3237_bases
ATGGCCATACTCCAACCTGAGCAAAGTATTATGTTACGTTTAGCGTGTTTATTCTTGTGTTTCCTTATAGTTAATACACT
GTCGGTTTCTGTATTTGCCAATACTCCCCTAACCCTAGATAAGCGCTTGGGGCTCAATAGCCAAGCCGAAAATCAGCCGC
TTGATATCACATCTCAAATTGCAGAACTGCAAAGCAGCATTGAAAAGCTGCAAATAGAACAGCAAACCTATACCAATATT
GAACAATCTAACAACGAAACCAAACTATCACTAGCAGGGCAATTACGCGAAGCGCAAATAGCATTGACTCTAGATGCGGA
TATCGATCTTGATCAGCAAGCCTCAATGGCCTATTTTCACTTATCGGAATTAAAAGAGACTGAGTCCAGCCTTAATGATA
AGTTGCGCCTAATTTCGCAACGTCAGACACTATTACCAGACTTAATAGTTCAGGCACAAAATGCCTTAACTCAGCATAAT
AAAACCCTCCAAGTCCCAATTGAGACTCCGTTAGGCCAACGTAACAAACTTCAAGCAGAACTGCTAACGCAGCATATTGC
GACCTTGCAGTCGGAACGTTTAGCTAATCCTAAGCAATTAGAGATTACCCAACTACAACAACAGCTCAATCGCTTATCAT
TAAGCCAACAAGAAACCTTTATCGAGCTTATCAACAAACATAATATTGAGTATCGTCAGCAGCAAACCGCAGACACCATA
GCCAACAACTTAATTGATGCTCAAGAACTGGCCGATCCATTATCTCAAGATTTAAGTAAGTTAAATCAGCACTATGCAGA
GCAATTACAAAAACTTACTAGCAATATAAAATCTGCGATAGAGAAACAACAACGCATTGAAAAACGCTATCAATCTCAAA
ATGCACAGCTATCAAACGTGCTTGAGCAAATTACCTGGGTTAAAACCAATTCTGCATTCGGCGATCGTTTCTTACAAATG
CTGCAATCATTGCCTAAACCGCCCAATCTCGACAAATTGCAAACAGAGTTAGCTGACACACGGCTAGAGCGCTACCAATT
AGAACAACAACAAGCGCTAAATAGTCAGCAACTCGATGACAGCGAAATGTTTAATGAAACCCAAGTCAAATTATTGCAAT
CACAGCAAGTACTGATAGAGCAGCTATTGCAAAGCTACGATCGATACCTGGCTGAATTTGCAAAATTGCGTATTGGTTAT
GAACAGTTAAATCAACTGCACAACACATTAAAAAATACTCTTAATGAGCATTTGTTTTGGGTACCTAACGCCCCTAGCAT
TGGCGCATTATGGCTAATTGATTTGAGCCACAGTAGCGTTTGGTTGCTGCAGCCAAGTCAGTGGCAGTCATTACAGCAAG
CGTGGTCCGAACAGAGTAATTATTGGGCTTGGTGGGGTATTTTATTATTGTGCTGTTTAATGGCACAAGACATGCTGACA
CCTAAGTTCAATAAAGCGATTGGACGCTATGCAATTTTTGTCGGTAATGTGACTCAAGATAAATTCAAATACACCATAAA
AACCCTAATCATCAGCTTAGTGTATGCCCTAATAAAACCCTTACCAGTGATCATGGCTGGGTTTATATTCTCGCGATCAG
AGCAAAATATGGTGTATGCCGTTGGAGTGGGCATCTTAGCCATTGGTGTCTGTTATCTCATTTACCAATTCTTTTACTTA
TTAACCGTTGATAAAGGCATTTTGATCAGCCACTTCAGACGGCCCAAGAAAATTGTAAAACAAGCACAACAAACCATGGC
TTCATTTGTCATGGTTTCGGCACCATTAATCGGTTTAATGGGCTTTACCGAAGCATTAGATACTTCGTTAGTACGCAACA
GTCTTGGCCGCGGTGCATTTATCGTTTTCTGTATTGTATTATGCCTGCTGTATAAAGATATCATGTTACTTATTGGCCAA
TATCGTAAAAATAAGCCTAACGCCACTAACATGGAGTTGATTCAAAAAGCGGTATGGGCACTTCTAGTTGTCACGCCAAT
ATTTAGCGCTATCTTGGCGGGAATAGGTTACTACTTCACGGCTTTCCAGCTGCTATTACAGCTACAAATATCGGTACTGT
TAGGCTTAGGTTTCTTACTAACCTATCAGCTCATTAAGCGTTGGATGTTAATCGAGCGTCGCCTAATTGCTTTTGACCGA
GCCAAAGCAAAACGTGCAGAGCGACTTGCACAGCGTGAAAGAGGCGAAATGAATAATGAGCCGATAGAAACCTACGAAGA
ACCCGTCGTTGATTTAGAAACCATCTCTAGCCAATCGTTAGGTTTAGTCAGGTCGATCTTAATTTTAGCTTTTTTTGCCA
GCTTATTAGGCATTTTGGCGCAAACACATACTGCGGTATTCTCATTTTTAGATGGCATCACCTTATGGACCACCAATAGC
AATGTAAATGGTATTGAGCAGCAAGTGCCCATTACATTGAAGTCTATTTTATTTGGCATCATGTTGGTCGGGTTCTCGGT
CGTTATTGCGAAGAATCTACCTGGTTTACTTGAATTAATGCTTCTACAAAGGCTCGATTTATCGCCAGGCACAGGTTTTG
CTATTACCACTGTGAGTAGCTACCTTGTGGTATTTTTTGGCATGCTGTTCGGGTTTTCAACTTTGGGCATGGAATGGTCA
AAATTACAGTGGTTAGTTGCCGCATTATCAGTGGGCTTAGGTTTTGGTCTCCAGGAGATTTTTGCCAACTTTATTTCCGG
TATTATCATTCTATTTGAAAAACCGATCCGTATTGGTGACACGGTGACGATCCGCGATCTCACCGGTACCGTCAGTAAAA
TTCAGATTAGAGCAACCACGATTGTCGATTGGGATCGTAAAGAAATTATCGTGCCTAACAAAGCCTTTATCACCGAACAA
TTGGTTAACTGGTCTTTATCAGATCCTATTACCCGCGTTATCGTTACGGTATCGGTGTCTCGTGATTCAGATCCAGCGAA
AGTCGAAATGTTATTGCATCAAGCGGTACGTGAATGTGACTTATCATTAACCAGCCCAGAACCCGAAGTATGGTTTGCGG
GTTTTGGTCAACACACACAAGATTATGAAGTACGCTCGTATGCAAAAGACATGTCTGATCGTTGGCCACTACGCCATAAT
TTACATAAGCGTATTAGTAAAAAATTAAAAGACAACAATGTTGAACTTGCCTACCCTCAGATGGAAGTTCATATTAATCA
TGCACCTAAAGAATCCACCGGATTATACAAGGGCTAA

Upstream 100 bases:

>100_bases
ACCAACCCTTATCGGCGGAACCATTATTGTGGCAACGGCTTTATTTGAAACCCAACAAAGTCATCAAAAAAGTAGAGCAT
AATCACGCAAATTTGCTACC

Downstream 100 bases:

>100_bases
GCTAAGTATTGATTAAGGACACCTATGCTCGTTTTTGCTCACCGCGGCGCCAGCGGTTATACTCCCGAAAACACCTTAGC
CGCAATGGACAAAGCCCTCG

Product: MscS mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1078_residues
MAILQPEQSIMLRLACLFLCFLIVNTLSVSVFANTPLTLDKRLGLNSQAENQPLDITSQIAELQSSIEKLQIEQQTYTNI
EQSNNETKLSLAGQLREAQIALTLDADIDLDQQASMAYFHLSELKETESSLNDKLRLISQRQTLLPDLIVQAQNALTQHN
KTLQVPIETPLGQRNKLQAELLTQHIATLQSERLANPKQLEITQLQQQLNRLSLSQQETFIELINKHNIEYRQQQTADTI
ANNLIDAQELADPLSQDLSKLNQHYAEQLQKLTSNIKSAIEKQQRIEKRYQSQNAQLSNVLEQITWVKTNSAFGDRFLQM
LQSLPKPPNLDKLQTELADTRLERYQLEQQQALNSQQLDDSEMFNETQVKLLQSQQVLIEQLLQSYDRYLAEFAKLRIGY
EQLNQLHNTLKNTLNEHLFWVPNAPSIGALWLIDLSHSSVWLLQPSQWQSLQQAWSEQSNYWAWWGILLLCCLMAQDMLT
PKFNKAIGRYAIFVGNVTQDKFKYTIKTLIISLVYALIKPLPVIMAGFIFSRSEQNMVYAVGVGILAIGVCYLIYQFFYL
LTVDKGILISHFRRPKKIVKQAQQTMASFVMVSAPLIGLMGFTEALDTSLVRNSLGRGAFIVFCIVLCLLYKDIMLLIGQ
YRKNKPNATNMELIQKAVWALLVVTPIFSAILAGIGYYFTAFQLLLQLQISVLLGLGFLLTYQLIKRWMLIERRLIAFDR
AKAKRAERLAQRERGEMNNEPIETYEEPVVDLETISSQSLGLVRSILILAFFASLLGILAQTHTAVFSFLDGITLWTTNS
NVNGIEQQVPITLKSILFGIMLVGFSVVIAKNLPGLLELMLLQRLDLSPGTGFAITTVSSYLVVFFGMLFGFSTLGMEWS
KLQWLVAALSVGLGFGLQEIFANFISGIIILFEKPIRIGDTVTIRDLTGTVSKIQIRATTIVDWDRKEIIVPNKAFITEQ
LVNWSLSDPITRVIVTVSVSRDSDPAKVEMLLHQAVRECDLSLTSPEPEVWFAGFGQHTQDYEVRSYAKDMSDRWPLRHN
LHKRISKKLKDNNVELAYPQMEVHINHAPKESTGLYKG

Sequences:
NA

Specific function: NA

COG id: COG3264

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA