| Definition | Shewanella frigidimarina NCIMB 400, complete genome. |
|---|---|
| Accession | NC_008345 |
| Length | 4,845,257 |
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Identifier: 114563379
GI number:
Start: 2641216
End: 2642769
Strand: Direct
Name: Not Available
Synonym: Sfri_2208
Alternate gene names: NA
Gene position: NA
Preceding gene: 114563378
Following gene: 114563382
Centisome position: NA
GC content: NA
Gene sequence:
>1554_bases ATGAAAGCAAACTTGATTATTATAGCTGGCAGTATGCTGGCTATAACGGGGTGCCAGACACTCCATACTGCAGAGCCAAG TTCTGATAGTACAACCCAGACTGTTACAGCTAACGCTAAAAACAAAAAATCAGCGACCGTAACTCTTGAGCAAATTGAAG AACAAGTTGCTCAAGTTAACGATTTATGGCTCAGGATCAGCAACCAAATGCACTTTCCTGTTGTCGATAATGCTTTGGTT GCTCAGTACCGCCAATGGTACATCGATAATCCTATGCATTTAGAAATCGTCACTCAACGTGCTCAGCCATATCTGTATTA CATTGTTGAACAGTTAAAAAAACGCAATTTACCTTTAGAGCTAGCATTGCTGCCTATTGTTGAAAGTGGTTTTGACCCAC TAGCCCATTCACCAAGTGATGCATCGGGTTTATGGCAATTAACCTCACCAACGGCCATGTCGTTTGGCGTAAAGACAAAT TGGTGGTATGACGGACGCCGTGATGTTGCCTCATCGACAAAAGCAGCTTTAGATTTAATGGAATACCTTTACGCCAAAAT GGATCACAATTGGTTATATACCATTGCCGCTTATAACTCTGGTGAAGGTCGAATATTCAATGCCATAAAACATAACCAAG CCCGCGGAAAATCGACAGATTTCTGGTCATTATCGCTGCCAAGAGAAACCGCTCACTATGTCCCCCAGTTATTAGCATTG GCAGATGTCATTAAACATGCAGATAAGTACGGCATCAATTTAACGCCTATAGATAACTCGCCTCAAATAGAGGTAGTCGA TATTGAAAGCCAACTCGACATTAATTTAGCGGCTGATTTGGCTCAAATTGACATAAATGATTTAAAAGCGATTAATCCAG GTTTAAAGCGCTGGGCAACAGCCCCACAAGGTCCACATCAATTGATTGTGCCTAGTGATAAAGCGGTATCCTTTAAACGA GCATTAGCCACTATTGAACCAAACTCCCGTATTAACTGGGTTCGTTATAAAATTAAGTCTGGTGATAGCATCAGTGAAAT TGCCGACCAATTTGAAACCACGGCTACATTAATAAGAAGCAGTAACGGTATTAAAGGCAATAATATTATTGCTGGTCGAT TTTTAATTATTCCTGTTGCGGCAAAAGATCCAGATTTAGCCACCATGACCGCAGACCAAGTACTGGCACGCAAAACGGTG GTCAAATCAAGCCCAAACAAGCAAGCTTATATCATTAAATCTGGTGATTCATTATGGAAGATAGCGCAGTCACAGCAAGT GACTGTCGCACAATTAATGAAATGGAATAATCTTAAAAAACAATCCACGTTAGCCATCGGTAAATCATTAGTTATTTTTC CTAATGAAGTCGCCATTAACACTGCAAGCAATGATAAAACGGTTAGCTATCGCGTCCAATCAGGTGACTCTTTAGCGCGT ATAGCACTTAAATATAAGGTTACCGTTGCAGAGTTAATCGAATGGAACAGTTTACAAAATAGTAAATTGATCCAACCTGG ACAGATACTGAAACTGATTGTGACCAATAGCTAG
Upstream 100 bases:
>100_bases TGCCAAACTGAACTAAAGCATGTCCAAAAGAGTCTCATAGGCATTTGGTATGTTCGCCCTTTTTTTTACGCCCTGAGAAC TTGAGGAAGTGTATCTTCAA
Downstream 100 bases:
>100_bases TTAGCTTTGCCTATAAGGGACTGTTACTCAACAAAGGTTATTGGTATTGGAATCGCTATTGGTATGAATTAAATACTCAG TTAAATTCAGCCATAAAAAA
Product: lytic transglycosylase, catalytic
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>517_residues MKANLIIIAGSMLAITGCQTLHTAEPSSDSTTQTVTANAKNKKSATVTLEQIEEQVAQVNDLWLRISNQMHFPVVDNALV AQYRQWYIDNPMHLEIVTQRAQPYLYYIVEQLKKRNLPLELALLPIVESGFDPLAHSPSDASGLWQLTSPTAMSFGVKTN WWYDGRRDVASSTKAALDLMEYLYAKMDHNWLYTIAAYNSGEGRIFNAIKHNQARGKSTDFWSLSLPRETAHYVPQLLAL ADVIKHADKYGINLTPIDNSPQIEVVDIESQLDINLAADLAQIDINDLKAINPGLKRWATAPQGPHQLIVPSDKAVSFKR ALATIEPNSRINWVRYKIKSGDSISEIADQFETTATLIRSSNGIKGNNIIAGRFLIIPVAAKDPDLATMTADQVLARKTV VKSSPNKQAYIIKSGDSLWKIAQSQQVTVAQLMKWNNLKKQSTLAIGKSLVIFPNEVAINTASNDKTVSYRVQSGDSLAR IALKYKVTVAELIEWNSLQNSKLIQPGQILKLIVTNS
Sequences:
NA
Specific function: NA
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA