Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114563373

GI number:

Start: 2633243

End: 2635387

Strand: Direct

Name: Not Available

Synonym: Sfri_2202

Alternate gene names: NA

Gene position: NA

Preceding gene: 114563364

Following gene: 114563376

Centisome position: NA

GC content: NA

Gene sequence:

>2145_bases
ATGACATTGACAAATAAAGTAATGCAAACCATTAAATTAAATACTAATTCCCCATGGGTTTACTCATCAATTGCATTGGC
TATAATGTTTGCTATTACACAACCAGTGATGGCTGAACAGTATGATAAGCGAAATAGTGAAGGCATTGAGCGGGTTGAAG
TACATGGACAAGCGGCCAATAACGATTTACTCGGTTCTGCCCAAAACTTATTAAATAAACAAGGTGTAGATTTTTCTGAA
GCGGGTGGCGTATCTGCATTACCGATTTTAAATGGCATGATGGGCGATCGGATCAAAGTGCTCATTGATGGCAGCGACAT
TACGTCATCATGTGCAAACCAGATGAACCCGCCACTTTCATATGTGTCAGCCAATCAAATTAGTTCGACCCAAGTGGTTG
CTGGAGTCTCTCCGGTGAGCGCCGGTGGCGATAACATTGCAGGCGTAATTAACGTCACTAGCTTAACCCCTGTATTTACC
GATAGCGACACAGTGACATGGCAAAGTGGTAACATATCTAGCGGTTATCGAAGCACCAATGACGCCATTCTCGCAGGTGT
AAATGCCACTGTTGCTAGTAAAACATTAAGCTTTAATTACCAAGGATCATTTGAAGATGCAAACAGCTATACAGATGCCC
ATGGCGATAAAGTACTAGACACTTTATACCAATCACAAAATCATGCATTAACCGCTGCTTGGCAAGATGACATTCAACAA
GTTGCTGTCAAATTGACTCATCAACATATCCCCTTTCAAGGTTTTGCAAACCAGTATATGGACATGACGAATAATGACAG
TTATGGCGCATTAGTACGTTATCAACGAACACTTGAAAACGAAGGCGAGTTCACAGCCCAAGCAAACTGGCACAATGTAG
AGCATCAAATGGGCTTCTTTACCGATGAAAAAACCGGCATGATGCCAATGAAAACTAAGGGTAAAGATTACAGTTACCAA
CTGCATTGGCAGCTACCAATGAGCTCAGACAGCACCTTATTAATTGGCCAAGAATATTATGTTTATCAACTTGATGATAC
ATGGCCTGCGATTGAAGGTTCAGCCATGATGGGTCCCAATGACTATGTCAATATTAATGGTGGCGAACGCCAACGTGCAG
CTCTTTATGCCGAGTGGCAACAAACAATGAATACACGTTGGTGGCTGTCTGCAGGTGTTCGTTATGAATACGTATCAACC
AGCACAGGTGAGGTTCAGCCTTATAACACCATGAGCATGATGGGCATGACCAATGTTAATGCCATAGCCGCAGATGAATT
TAATGGCCTCTATCGAAAGCGCAATGACAATAACATCGATGCCACCCTTCTAGCTCGCTATCAACTCAGTGATACTGAAG
TGATAGAGCTTGGTTTAGCCCAAAAGAACCGCGCACCCAATTTATATGAGCGATACAGTTGGGGCCAAAGCACCATGGCC
ACAACGATGATTGGCTGGTATGGCGATGCAAACGGCTACATAGGCAACCCAGACCTTAGTGCAGAAACTGCACATACATT
GAGTATGGCTTACAAGCTAGTACAAGATGATTTAGCATTTAGTGCAACAGCTTGGTACAGCAGCATTAACGATTTTATTG
ATGCCAATGTGGTCAGCAGCTTTAATCGCACAAGCATCGATACTAATAGTCGTCATATTTTACAGTTTACAAATGTCGAC
GCCACCCTGTTTGGTGCACGCATTGATGCTGAATATCAACTAGCAGACAATGACACGGGTAAATGGCGCTTTAACGCTAA
CATCAACGCAACTCGCGGCGAAAGAGATGACAATGACCAGCCGCTGTATCAAATAAAACCTTTGCAAACAGAGCTAGCTT
TGCAACAACAGCTAGGTGATTGGCAAAATAGGTTCAGTTGGCAATGGGTTGCAAGTAAAGATCGCGTGGATGAACAGCGT
TTAGAAAACACAACTGACAGTTACTCACTGCTTAATTTAAGCAGCAGTATCCAATGGCATGATGCCACAATGACTATTGC
AGTGAAAAATCTACTGGATGAGTATTATCAACTGCCTCTGGGCGGTGTCAGTATCGCTGAATATAAGGCTGACAGCAGTA
ACGGTTTTCAACAAATAGCCGGTTCGGGTCGCTCACTGGAGCTCAATGTCAATTACGTATTCTAG

Upstream 100 bases:

>100_bases
TGTCGCATTCATCATATTTATTAGCAGGTTATAATTTAACAGACTAATAAACACCTTTGAAATATATTCATCAAAGGTTG
ATAAAATAACAATAAAGGTG

Downstream 100 bases:

>100_bases
TTAACCAGCTATAAGTAATAAGCCGATGCCATGTAATAATTACCACATTATTGGCTAACCTGAAACGGCAGTACTGCTGA
TGTTAAGATAGACAAAAGCC

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>714_residues
MTLTNKVMQTIKLNTNSPWVYSSIALAIMFAITQPVMAEQYDKRNSEGIERVEVHGQAANNDLLGSAQNLLNKQGVDFSE
AGGVSALPILNGMMGDRIKVLIDGSDITSSCANQMNPPLSYVSANQISSTQVVAGVSPVSAGGDNIAGVINVTSLTPVFT
DSDTVTWQSGNISSGYRSTNDAILAGVNATVASKTLSFNYQGSFEDANSYTDAHGDKVLDTLYQSQNHALTAAWQDDIQQ
VAVKLTHQHIPFQGFANQYMDMTNNDSYGALVRYQRTLENEGEFTAQANWHNVEHQMGFFTDEKTGMMPMKTKGKDYSYQ
LHWQLPMSSDSTLLIGQEYYVYQLDDTWPAIEGSAMMGPNDYVNINGGERQRAALYAEWQQTMNTRWWLSAGVRYEYVST
STGEVQPYNTMSMMGMTNVNAIAADEFNGLYRKRNDNNIDATLLARYQLSDTEVIELGLAQKNRAPNLYERYSWGQSTMA
TTMIGWYGDANGYIGNPDLSAETAHTLSMAYKLVQDDLAFSATAWYSSINDFIDANVVSSFNRTSIDTNSRHILQFTNVD
ATLFGARIDAEYQLADNDTGKWRFNANINATRGERDDNDQPLYQIKPLQTELALQQQLGDWQNRFSWQWVASKDRVDEQR
LENTTDSYSLLNLSSSIQWHDATMTIAVKNLLDEYYQLPLGGVSIAEYKADSSNGFQQIAGSGRSLELNVNYVF

Sequences:
NA

Specific function: NA

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA