| Definition | Shewanella frigidimarina NCIMB 400, complete genome. |
|---|---|
| Accession | NC_008345 |
| Length | 4,845,257 |
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Identifier: 114563316
GI number:
Start: 2552902
End: 2554746
Strand: Direct
Name: Not Available
Synonym: Sfri_2145
Alternate gene names: NA
Gene position: NA
Preceding gene: 114563314
Following gene: 114563317
Centisome position: NA
GC content: NA
Gene sequence:
>1845_bases ATGTCCGCTAAACCCTCGTTTTTAAAAAGGATGTTTTTACTGTTATGGAATACAGTAAACGGTATCCGTAAGTTCATCAT CAACGTAATATTTTTTGGTTTGTTGGCTGTCATCACTGTGGTACTTCTCAACAGCGAAGATGAAATTGTCGTCGAAGATC AATCAGCATTAGTGCTGAACTTGTCTGGGAGCATAGTGGACCAAAAACATTATGTAGACCCAATAGAAATGGCATTTAGC CAAGGGCAAGCGAATGATCCAGAAGGTGAAATTCTATTAGCTGACGTACTTTATACAATTAATAATGCGACTCAAGACGC CCGCATTACCAGTATCGTATTGGACTTAGCTGATCTTCGTGATGCCGGCATTAGTAAAATGACCGCCATTGGTGAAGCAT TAACTCAGTTTAAAGCAGCCAATAAGTCAGTTATCGCAATGGCCAATGGTTATGATCAAAATCAATATTTTTTAGCCAGC TTTGCAGACAAAATATACCTTAATAACCAAGGTATGGTAGCGCTTGATGGCTTAAGCCGTTATCGCTTATATTACAAAGC AGCACTCGAAAAACTCAAAATTACCACTCACGTATTTCGAGTGGGAACGTTTAAGTCAGCTGTAGAGCCCTTTATTCGTG ACGATATGTCTGATGCCGACAAAGTCGCCAGCAAAGAATTGTTAAATGATATTTGGCAAAGCTACTCGACTATTGTTGCC AGCAACCGTCAAATCGCTCCAGATCAATTAGTGTTAAGTACAGATGAGTATCTCGCTCAGCTTGATAAAGCTGAAGGTGA CAGTGCTCAAATGGCTGTAAACATGAAATGGGTTGACGAACTGGTTTCGGCTGATGCATTCCGTGTCGCTATGATTGAAC GTGTAGGCAGTGATAAAGAAGGTAAAAACTTTAAGCAAATTAGCTTTAATGATTACCGAACATTAACCGCACCAATGCCT AAATTTGTTGAACAAGACGCAGTGGCCGTTATCGTTGCTAAAGGCACGATTCTTAACGGTAAACAACCTGCCGGACAAAT TGGTGGCGAAAGTACCTCTGCATTGCTCATGAAAGCACGCTTTGACGATAAAGTGAAAGCCGTCGTACTTCGTGTTGACA GCCCTGGTGGTAGTGCATTTGCATCAGAGCAAATTCGTCAAGAAGTGTTAGCGCTAAAAGCTGCAGGTAAGCCTGTGGTT GTTAGCATGGGTAGCCTTGCTGCATCTGGCGGATATTGGATATCAGCCAGTGCCGACTATATTGTGGCTACGCCAACAAC CCTAACAGGTTCAATCGGTATTTTCGGTATGTTCGCTACGTTTGAGCAAGCTCTTAATCATTTTGGTGTAACCTCTGATG GTGTCGCAACATCTGATTGGGCAGGTTTATCGCCTGCACGTGAATTAAACCCACAAGTTGCCGCGGTAGTACAACGTCAT ATTGAACGTGGTTACCATGAGTTTATTTCTCTGGTAGCAAAAGAGCGTCATATGACGCTAGAGCAAGTAGACAATATTGC TCAAGGCCGTGTATGGACAGGTAAACGCGCACTCACCTTAGGCCTAGTTGATGAACTGGGTGATATGGATGTGGCATTAG CCAAAGCTGCTGATTTAGCGAAAATGGACAAGTTCGACGTTAAAGTGATTGAGCAAGAGCTAAGCGCTGAACAACAACTG ATGCAGCAAATCATGGGCGCTACTGTGGCTTATGTTCCAGACAGTGTTCGTCAAACTAGTTTCATTGAACGCTTTGCCAA GCAGTGGGCTGGTGCATTTGAAACATTGTCGATGTTTGATGACCCTAATCATGTCTATATGTATTGCGAAAACTGTAATT ACTAA
Upstream 100 bases:
>100_bases CATTTAAACGCTCGTTTGTTAAAAACCTTTACAATTGAATTTCACATTTTTATTGATTTTCAGTTAGGATGACTACATTA GACTGATAAAGGAGTGGCAA
Downstream 100 bases:
>100_bases TCAATAATATGATAGCAATATGAATATTATTCAAAAAAAGCCTGCTTAGCAGGCTTTTTTATTGGGGATCGTCAAATAAA CTCGTATAATTTGCACAATC
Product: signal peptide peptidase SppA, 67K type
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>614_residues MSAKPSFLKRMFLLLWNTVNGIRKFIINVIFFGLLAVITVVLLNSEDEIVVEDQSALVLNLSGSIVDQKHYVDPIEMAFS QGQANDPEGEILLADVLYTINNATQDARITSIVLDLADLRDAGISKMTAIGEALTQFKAANKSVIAMANGYDQNQYFLAS FADKIYLNNQGMVALDGLSRYRLYYKAALEKLKITTHVFRVGTFKSAVEPFIRDDMSDADKVASKELLNDIWQSYSTIVA SNRQIAPDQLVLSTDEYLAQLDKAEGDSAQMAVNMKWVDELVSADAFRVAMIERVGSDKEGKNFKQISFNDYRTLTAPMP KFVEQDAVAVIVAKGTILNGKQPAGQIGGESTSALLMKARFDDKVKAVVLRVDSPGGSAFASEQIRQEVLALKAAGKPVV VSMGSLAASGGYWISASADYIVATPTTLTGSIGIFGMFATFEQALNHFGVTSDGVATSDWAGLSPARELNPQVAAVVQRH IERGYHEFISLVAKERHMTLEQVDNIAQGRVWTGKRALTLGLVDELGDMDVALAKAADLAKMDKFDVKVIEQELSAEQQL MQQIMGATVAYVPDSVRQTSFIERFAKQWAGAFETLSMFDDPNHVYMYCENCNY
Sequences:
NA
Specific function: NA
COG id: COG0616
COG function: function code OU; Periplasmic serine proteases (ClpP class)
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA