| Definition | Shewanella frigidimarina NCIMB 400, complete genome. |
|---|---|
| Accession | NC_008345 |
| Length | 4,845,257 |
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Identifier: 114563147
GI number:
Start: 2342841
End: 2344157
Strand: Reverse
Name: Not Available
Synonym: Sfri_1976
Alternate gene names: NA
Gene position: NA
Preceding gene: 114563150
Following gene: 114563133
Centisome position: NA
GC content: NA
Gene sequence:
>1317_bases ATGAACAACACCACCGTTGTACAATCTATGATAAACGCCATTGATAAACCGGCGATTTTTATTACTCCCGATTATGTGAT CCATGCGGTTAACCAAGCCTATAGAGAAACCTATGATGCCGACGTTATTTTAGGCCAAAGTAAATGCCATCAAATCTCTC ATCACAGTGACCAACCTTGCGATAAACACGGTGAGGAATGCCCGTTATTACAATGCCAGAGTACTAACCGAGCTGCCAGT GCAGTGCATATTCACAGCACAGTGCAAGGTAAGTCTTACTGCGACATTTTAATGAAACCCATAAAAGATAACAGTGGCAT GGTATTGGGGTTTCTAGAGATTTTAGATGCTATAGATTACGCATCGACGGAATCAAAAAAAGGCACTATGGTCGGTCAGT CAGCGCCATTTAAACAGATGCTCAACAGGATTAATCGAGCATCTCAATCCAATATAGCGGTACTGTTACAAGGTGAAACT GGTTCAGGTAAAGAGTTAGTCGCTAAAGCGGTACATCAGGCCAGCAACCGAAATGATAAACCGTTTGTGGTGATTGAATG TACTGGGCTGAGTGAAAACCTGTTCGAAAGTGAGCTGTTCGGTTATGAAAAAGGTGCATTTACAGGGGCGACAAGCAGTA AAAAAGGCTTGATTGAAATAGCGCACGGTGGAACGGTATTTTTTGATGAAATTGGCGATGTACCGATGAACATGCAAGTG AAGTTACTCAGGTTACTTGAAACCCAGTGTTATCGTGCCGTCGGCGGATTAAAACAGAAACGTTCTGACTTTAGGCTAGT CAGTGCCAGCCATAAGAATTTACTCGATTTAGTAGAAAAAGGTGAATTTAGGCGCGACCTGTATTACCGCATTGCAGGAT TTCCAATCTACTTACCGTCGTTACGTGAGCGCTATGATGACATTCCAACGCTGGTGAATCACTTTATAAAATATTCTGAT TACAAACATAAAAAGTTTTCGAGCAATGCATTAACTCTTTTGGGTCGTTATGCATTTCCGGGGAATATTCGCGAATTGAA AAATATTATTGAGCAATCGGCACTTATCGCCAATGAGGATGTTATACACAGCAGTGATTTGCCTGAAAGCGTTCAACTTA GTCGCACATCTACGGATGAAACAATTGCTGTAAAACTTAACACCGAACTGATGACGTTAGATGACATGGAATGTGCGTAC CTTTCGCAGGTATGTGAGCAATATGCAGGATCGCCAGCCGAACTAGCGATAACGCTTAATATCAGTGTGCGTACCTTATA TCGAAAATTACAACGCTATGGTTTAAAGCTTAGCTAG
Upstream 100 bases:
>100_bases TTGTTGAGTGACAAATATGACATCGTAATGACATTTATCGTGCTATTAATGTCATTATAAAGGTTGGCCGATTAATATAA ATCGCAAGCGAGAGTAACCA
Downstream 100 bases:
>100_bases CCACCACAGCGCTGTGACAAAACATGCCTAGTGATCATTAATGAGCAATTAGTGGATGTTTTTTATTACAGCAACGTTTC ATTGTAGCTGTTTCATTCGC
Product: sigma54 specific transcriptional regulator, Fis family protein
Products: NA
Alternate protein names: NA
Number of amino acids: NA
Protein sequence:
>438_residues MNNTTVVQSMINAIDKPAIFITPDYVIHAVNQAYRETYDADVILGQSKCHQISHHSDQPCDKHGEECPLLQCQSTNRAAS AVHIHSTVQGKSYCDILMKPIKDNSGMVLGFLEILDAIDYASTESKKGTMVGQSAPFKQMLNRINRASQSNIAVLLQGET GSGKELVAKAVHQASNRNDKPFVVIECTGLSENLFESELFGYEKGAFTGATSSKKGLIEIAHGGTVFFDEIGDVPMNMQV KLLRLLETQCYRAVGGLKQKRSDFRLVSASHKNLLDLVEKGEFRRDLYYRIAGFPIYLPSLRERYDDIPTLVNHFIKYSD YKHKKFSSNALTLLGRYAFPGNIRELKNIIEQSALIANEDVIHSSDLPESVQLSRTSTDETIAVKLNTELMTLDDMECAY LSQVCEQYAGSPAELAITLNISVRTLYRKLQRYGLKLS
Sequences:
NA
Specific function: NA
COG id: COG3829
COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains
Gene ontology:
Cell location: NA
Metaboloic importance: NA
Operon status: NA
Operon components: NA
Similarity: NA
Homologues:
NA
Paralogues:
NA
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: NA
Theoretical pI: NA
Prosite motif: NA
Important sites: NA
Signals:
NA
Transmembrane regions:
NA
Cys/Met content:
NA
Secondary structure: NA
PDB accession: NA
Resolution: NA
Structure class: NA
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: NA
TargetDB status: NA
Availability: NA
References: NA