Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114563054

GI number:

Start: 2226182

End: 2228386

Strand: Direct

Name: Not Available

Synonym: Sfri_1883

Alternate gene names: NA

Gene position: NA

Preceding gene: 114563053

Following gene: 114563057

Centisome position: NA

GC content: NA

Gene sequence:

>2205_bases
ATGAATCGAAAAGAGCAACAGCACTTATTGGAATTAATTGTAAATTCCAGTGCTAAACAACAAGGTGATTTCACAAAAAC
CGCAGAGTTGGTGTGCCAACTTCTGCGTGAGTATTTCACTGCATCATTTGTGTCAGTTTGGACTCTGGTCAGTAAAACCG
ATAACGATGACTTTGCTGCTGATGACAATTTCATTTGTGAGCATACTTTAGTTGCAAGTAAGATTGATGAAAAGTTGAGT
CATTCATCTCATTTGAGACAAATCACAATAGATCCTCAGTATTTCAATGAACTACGGTCTCACCGTTACATTTTATCTTC
TGACAATCCGCATATAAATCTAGTTCAAACATTTTCTGATTACTACCAACATCATAACATCATCACCAGCATTGATATTG
CCATCCGAATCAATGGCCATATTGAAGGTGTGTTATCGGTTGAAAGTTGTGCCGATGTCAATTGGATAAAATCAGATATT
CAGTTTGCGATTCAATGTGCTGACCAATTAGCGCTGACGTTAGCTACACGTTATACCTATGATAGTAATGAGCAAATTTA
TTTATTACGCAATGCAACCGAACAATCAGAACATGTAGTGATGCTGGTGAATACCGATAGTCGAATCATCGAGTACGTTA
ATAGTGCACATGAGAAAATGACAGGGTTACCTCGCACTACGGTTGAACATCATAGTGCTTCAAGTCTTGATATTTTTAGA
AATACCCCGCAATTACTCGACCATATCATCAGTAAATTACGTAATAGTGAGATTGTTAAAGGTGATCTTAAACTCGCGCG
AATAGATGGCAGTGAATATTGGCTGAATTACCACATAACACCGTTCGTAACAGAACAGGGTAAGCATTATGCGTTAGTGT
CTAGTTATGACAATTCGGCTGAATATTTACACAAAGCAGAATTAGAGCGTTTAGCATGGCATTGCTCATTAACTGGCTTA
CACAATCGCAGTCATTTTACCCCTCAATTAGATCGTGCCACTGATGGGATATTGATTCTTATTGATTTATTAGGCTTCAA
ACGCTTTAACGATACTAATGGTCATGCACAAGGCGATAGCTTATTAATTGAGACTGCTCGGCGCCTAAAACACTTTGCCG
TATCAACCAATGCTATTGATGTTGCCAGAATAGGTAGCGATGAATTTGCGATATTATTGCCGCCAATGTTACCGGAAACG
GATATAGAACAAATGATCGGCCGGCTGTATATGAATCTAGCCGCTCCATCAGTTATCTCACGAGAAAAAGTTGAACCTAA
GCCTGCGATTGCAGTGGTTGATATTAAGTCTGTTGTCGGGATGTTTGCCCCGTTATCTTGTGCTGATATTACCTTGCAAT
ATGCAAAAAAGAAAAATGGTACTCATTACCAGTTTTTTAATGAAGCACTATTGGAAACATTCACTATCAATGCTGAAATA
GAGCGAGACTTACACCATGCGATCCGTGGTCGTGAGTTTGAGTTGTATTATCAACCCTTAATGGATTTGCAAAATAATAA
ATATATTGGCGCTGAAGCATTAATTCGCTGGAATCATCCTAAAAAAGGCGTGTTATATCCAGGCGCGTTTATTGAAATTG
CAGAACAAACTGGAATGATTAATCAAATCGGTGAGTGGGTATTAGAAACGGCCTGTAAACAATTGAATTTGTGGCAACAT
AAAAACGTTAATATTGCGATGCATGTGAATGTAGCCGCGCGGCAATTTTTTAGCGGCAATCTGTACGAACAAGTTTGGCG
GTTGATTACCCGTTATCACATCAAACCAAAGACTTTGATCCTTGAAATCACTGAAACAGAACTCATGGGTGACATTCGTT
ATGCTATTAATTTATGTCACGAATTAGCAGAGTTAGGCGTAGGTTTAGCGATTGATGATTTTGGAACGGGTTATAGTTCG
ATGAAATACCTTAAACAGTTTCCTATTTCGAAATTGAAAATTGATCGCTCATTTATTATGGATATTTCTTCTAGCCACGA
AAGCCGTGAGATTGTCAGTGCGATTATTGCGATGGCAAAAGCATTGAATATTTCGTTAACTGCAGAAGGGGTTGAAACCA
AAGAGCAAGAGGAATTTTTAACATTGAGTGCTTGTCATCATGCTCAAGGATTTTTGTACAGTCCAGCTATTCGCGTTAAT
GATTTTGCCTTGTTTATTAATGCACATGAAACAATACAACACTAA

Upstream 100 bases:

>100_bases
ACATTGTCACTCAAATTCTGAATGTCAGAACTAATAAAAACAAGTGTACTGAGTTAATAATGTAAAAATTTAGGGTTATG
AAGCCAATTTCGGGATGTAA

Downstream 100 bases:

>100_bases
TTTATATCAGTGATGGATTCATTGTTTAGTCATAATAGTCCATTGTCGTGCTCATCTTGCTTTGTTTCACATGACTCTGT
TACAACCGATTTATTGAACA

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>734_residues
MNRKEQQHLLELIVNSSAKQQGDFTKTAELVCQLLREYFTASFVSVWTLVSKTDNDDFAADDNFICEHTLVASKIDEKLS
HSSHLRQITIDPQYFNELRSHRYILSSDNPHINLVQTFSDYYQHHNIITSIDIAIRINGHIEGVLSVESCADVNWIKSDI
QFAIQCADQLALTLATRYTYDSNEQIYLLRNATEQSEHVVMLVNTDSRIIEYVNSAHEKMTGLPRTTVEHHSASSLDIFR
NTPQLLDHIISKLRNSEIVKGDLKLARIDGSEYWLNYHITPFVTEQGKHYALVSSYDNSAEYLHKAELERLAWHCSLTGL
HNRSHFTPQLDRATDGILILIDLLGFKRFNDTNGHAQGDSLLIETARRLKHFAVSTNAIDVARIGSDEFAILLPPMLPET
DIEQMIGRLYMNLAAPSVISREKVEPKPAIAVVDIKSVVGMFAPLSCADITLQYAKKKNGTHYQFFNEALLETFTINAEI
ERDLHHAIRGREFELYYQPLMDLQNNKYIGAEALIRWNHPKKGVLYPGAFIEIAEQTGMINQIGEWVLETACKQLNLWQH
KNVNIAMHVNVAARQFFSGNLYEQVWRLITRYHIKPKTLILEITETELMGDIRYAINLCHELAELGVGLAIDDFGTGYSS
MKYLKQFPISKLKIDRSFIMDISSSHESREIVSAIIAMAKALNISLTAEGVETKEQEEFLTLSACHHAQGFLYSPAIRVN
DFALFINAHETIQH

Sequences:
NA

Specific function: NA

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA