Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

Click here to switch to the map view.

The map label for this gene is Not Available

Identifier: 114562666

GI number:

Start: 1778819

End: 1782193

Strand: Reverse

Name: Not Available

Synonym: Sfri_1490

Alternate gene names: NA

Gene position: NA

Preceding gene: 114562669

Following gene: 114562664

Centisome position: NA

GC content: NA

Gene sequence:

>3375_bases
ATGAAACGTATGTTAATTAATGCAACTCAATCAGAAGAGTTGCGCGTAGCCCTAGTAGATGGGCAAGAACTGTATGATTT
AGACATTGAAAGTCCTGGTCACGAACAGAAAAAATCAAATATCTATAAAGGTAAAATCACTCGAGTAGAACCGTCACTTG
AAGCTGCATTTGTTGATTACGGTGCAGATCGTCACGGTTTTTTACCTCTCAAAGAAATTGGTCGCGAATACTTCCCAAAA
GGTTATTCATTCCAAGGCCGTCCAAACATTAAAGAAGTGTTACAAGAAGGCCAAGAGGTCATCGTTCAGATAGATAAAGA
AGAACGAGGCAACAAAGGCGCTGCACTAACTACTTTTATTAGTCTTGCTGGATCTTATTTAGTCTTAATGCCAAATAACC
CTCGTGCTGGCGGTATTTCTCGTCGTATCGAAGGTGATGAACGTACAGAACTAAAAGAAGCAATGGCTGAGTTAGAAGTA
CCTAATGGTATGGGCTTGATTGTGCGTACTGCTGGTGTTGGTAAAGAATCAACAGAGCTAAAGTGGGACTTAAAAGTACT
ACAACATCATTGGGATGCTATTCAAGAAGCTGCTCAAAGTAAAGCTGCACCATTCTTAATCCACCAAGAAAGTAACGTGA
TTGTTCGCGCTATTCGTGACTATTTACGTCGTGATGTAGGCGAAATCCTTATCGATCACCCACGTATTTTCGAAGAAGCT
AAATTGCATATTGGTTTAGTGCGTCCTGATTTTGTTGAACGTGTAAAGCTATATGACTCAGAAGTACCACTGTTTACTCA
CTTCCAAATAGAGTCTCAAATTGAGTCAGCGTTCCAACGCGAAGTGCGTTTACCTTCAGGTGGATCAATTGTAATTGACC
CAACAGAAGCATTAACGTCTATCGATATCAACTCAGCCCGTGCAACTAAAGGCGGCGACATTGAAGAAACTGCACTAAAC
ACTAACCTTGAAGCTGCTGATGAAATTGCTCGTCAATTACGTCTTCGTGATTTAGGTGGTTTAGTGGTTATCGACTTTAT
CGATATGACACCTGTTCGTCATCAGCGTGAAGTTGAAAATCGTTTACGTGATGCAGTACATCATGACCGTGCTCGTGTGC
AATTAGGTCGTATTTCTCGATTTGGTTTGATGGAAATGTCGCGTCAGCGTCTACGTCCATCGCTAGAAGAGTCTGCCGCT
CATTTGTGCCCTCGTTGTCATGGTCAAGGCACTATTCGTAGTACCGAATCTTTAGCATTATCGATTTTACGATTAATGGA
AGAAGAAGCCATTAAAGAAAACACCACACAAATCGAAGCGATTGTGCCTGTTGATGTTGCTGCGTTCTTACTAAACGAAA
AACGTAAAGCGATTCGTATTACAGAAGAGCGTCACCAAGTTGAAGTGTACATCATTCCAGATGCACACATGCAAACACCA
GATTACCGTGTAGTGCGTCGTAAGAGTGATGATGAAGTCAGTGAATCTAGCTATAAGCGAGTAGAACAGCCTGTCGCAAA
ATTGTATGAGCCTCGCAAGCTTGAGCGTGCAGCATCTCCTGAACCTGCATTAAAAGGCTTCGCAGCGCCACAAAAAGCAG
CTGAAGATACAGTAAAAGCCACACCAGTAAATGTCGCTCCTGTGGCAACGTCTAATCAGCCAAGTTTATTCACTCGAATG
ATCTCTGCCATTAGCGCTTTATTTTCTGGAAGTGAAGCTGAGGTTAAAGAGACCAAAGCAGCAGTATCTACTAAAGAATC
GACTCAAACTAACACTCGTCGTAACACCCGTCGTAATGACACTCGTAACGACAGCGCTAACCGTAATGACAAACGCAATG
ACAGTCGCCGTCAACGTAATGACAGCGACAAATCGAAAGACGGCACAGAAGCTCGTTCTCAGAATAAGCGTAATGAACGT
AATAGCAGAAATACAGTTCAAGATGACAACGCCAAAAACAAACCGAAAACTGAGAAAGTTGACAAGCCATTAGCTGTCAA
TGAAACCAAAGCAACAGATGCTAAAGTTGCCGAAGTTAAAGTCGCTACAGAAAAATCTCCAAAACAAGAAGCTGCTCGTG
AGCGTCGCCAACGTCGTAATTTACGTCGTAAAGTGCGTATTGAAAACGAACAGAGTGAAGCATTACCAACAACCGATGTT
AATGATAATAAATCAACTGAGCAATCAGTTGAGGTAATGACATCAGAACCTAAAGCGGTAGAGTCAAAAGTAGCTGAAGA
TAAAACATCAGAAACGAGAGCGCCACGCAGTCGTCGTCAACCTCGTAAAGAGAAGACTGAACAGGCGGTTGAAGCGCCAG
CTGAAAATGAAACAGAGCAAGCAACTGATCCAGTTACTGAAGTAGCAAATGTTACCAGTACTGCTGCTCCAGTTGAAACT
GACGCTACTGCCGTGGTTGAAGTAAAAGCAGAAACAACTCAAGCAGATGTTGATACTGTCACTGAAACGGTAGTTGCTAG
CACTGACGTTGCAGCTGAAACTGATGAGTCAAGCTCGAGCGCTGAAGATGCTACAACAGACAGCGAAGCTGAAGGCCGTG
AAGGTCAACGTCGTAGTCGTCGTAGTCCTCGTCACTTACGTGCAGCAGGTCAACGTCGTCGTCGTGATGATGAAACAGGC
TCTACACAACCAGCTGTTTTCACACCTAATGATGAGTTAGAGAAGCAATTAGACGCAGAGCAAGCTAGAACTCAAGCACA
AGCTCCTGTAACTGAGGCTATTGTTGAATCCGTTACTAAACCTGCTGAAACGGTTAGCACTGCTGCTGAAACCGCTACTA
AGCCGGTTGAAGTGCTTAAAGCTGAAGTTAACAAAGCTAATGCAGCACCCGTTAATGTTGAAAAAACTGAAACGCCAGTA
GAAATAAAGGAAGTACCTCAAGCAGTAAAAGCACCTGAGGCCCCTGAACCTAAAGCTGAAGTAGAAGTTGTTAAAACAAC
GGTTGATGTTGAAGCTAAACAAACCACTGTGGCAAATACCGCAGTTGTTGAAGCTGAAAAAGCTGCAGCGTTAACTAGCA
AGCAAGATAAAACGGTTGCGGCCAATTCATCTGCGCCTATGGCTAAGCCTGCTGCAATTGTGCGTCAAGCTAAACCTGAA
GTCGTAAAAGAAGTCGCGGCGACAATAGCAGAGACGGTTTCTACTGAAGCAGCGCCATCAACCAAAGTCCCCGTAAAGGC
AAGTCGCTTTGGTTCTATGGTGTCATCTGACACGACTAAACCTACAGTAGATGTCCGTGAGCAGAAAGCGGTACCTCAAG
GACGTACTTACGAAGCTCAAGCGACTGACAGCAAGGTTACGAAAGTAGCGAAGAATAACAGTGCATCTGCTGATATGACT
CGCCCTGGAGAGTAA

Upstream 100 bases:

>100_bases
ATTGCCTGGATCTAGCCGTGAGGTTATACCGATTAATTCAGGCCCGTAATGCAGAAAAATCGTGTTGTTTGATGACCTCA
TTTAGAAGAATCACGTCATC

Downstream 100 bases:

>100_bases
ACTTAATAAAGGGCTAACTTCGCCCCATTATTTATAAAGCCATGCTTAGCATGGCTTTTTTATTGGAAATATTAATATAA
AACTTAACATTTAGTGTCAT

Product: ribonuclease, Rne/Rng family protein

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1124_residues
MKRMLINATQSEELRVALVDGQELYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGADRHGFLPLKEIGREYFPK
GYSFQGRPNIKEVLQEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMAELEV
PNGMGLIVRTAGVGKESTELKWDLKVLQHHWDAIQEAAQSKAAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEA
KLHIGLVRPDFVERVKLYDSEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARATKGGDIEETALN
TNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAA
HLCPRCHGQGTIRSTESLALSILRLMEEEAIKENTTQIEAIVPVDVAAFLLNEKRKAIRITEERHQVEVYIIPDAHMQTP
DYRVVRRKSDDEVSESSYKRVEQPVAKLYEPRKLERAASPEPALKGFAAPQKAAEDTVKATPVNVAPVATSNQPSLFTRM
ISAISALFSGSEAEVKETKAAVSTKESTQTNTRRNTRRNDTRNDSANRNDKRNDSRRQRNDSDKSKDGTEARSQNKRNER
NSRNTVQDDNAKNKPKTEKVDKPLAVNETKATDAKVAEVKVATEKSPKQEAARERRQRRNLRRKVRIENEQSEALPTTDV
NDNKSTEQSVEVMTSEPKAVESKVAEDKTSETRAPRSRRQPRKEKTEQAVEAPAENETEQATDPVTEVANVTSTAAPVET
DATAVVEVKAETTQADVDTVTETVVASTDVAAETDESSSSAEDATTDSEAEGREGQRRSRRSPRHLRAAGQRRRRDDETG
STQPAVFTPNDELEKQLDAEQARTQAQAPVTEAIVESVTKPAETVSTAAETATKPVEVLKAEVNKANAAPVNVEKTETPV
EIKEVPQAVKAPEAPEPKAEVEVVKTTVDVEAKQTTVANTAVVEAEKAAALTSKQDKTVAANSSAPMAKPAAIVRQAKPE
VVKEVAATIAETVSTEAAPSTKVPVKASRFGSMVSSDTTKPTVDVREQKAVPQGRTYEAQATDSKVTKVAKNNSASADMT
RPGE

Sequences:
NA

Specific function: NA

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA