Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114562173

GI number:

Start: 1163942

End: 1166038

Strand: Direct

Name: Not Available

Synonym: Sfri_0995

Alternate gene names: NA

Gene position: NA

Preceding gene: 114562171

Following gene: 114562174

Centisome position: NA

GC content: NA

Gene sequence:

>2097_bases
GTGAATCCAATTGTAAAGAGTTTTGAGTATGGTCAACATACAGTCACCTTAGAAACAGGTGTTATTGCACGTCAAGCTGA
TGCTGCAGTTTTAGCAAGCATGGGCGATACCACAGTATTAGTTACTGTAGTTGGTAAAAAAGTAGCGGATTTAAGCCGTG
ACTTCTTCCCGCTAACTGTTAACTATCAAGAAAAAACCTATGCTGCAGGTAAAATACCTGGTGGTTTCTTCAAGCGTGAA
GGTCGTCCATCAGAAGATGAAACTCTGATTGCGCGTCTTATTGACCGTCCTATTCGTCCTTTATTCCCTAACGGTTTTAA
AAACGAAGTTCAAGTTATCATCACTGTGGTTTCTGTTGATCCACAAATCGAGCCAGATATTGTTTCGATGATTGGTACCT
CAGCAGCGTTAGCTATTTCTGGTATTCCTTTCAGTGGCCCACTAGGTGCGGCGCGTGTTGGTTATATCAACGATGAATAT
GTACTTAACCCAACGGTTGATCAGCTTGCAACAAGTTCACTAAACTTAGTTGTTGCTGGTACTAAGGCTGCTGTACTTAT
GGTTGAATCTGAAGCTAAAGCGCTTGCAGAAGAAATCATGTTAGGTGCTGTAACTTACGGCCATGATCAACAACAAGTTG
TTGTTGATGCTATTGCTGAGTTCAAAGCAGAAGCTGGCAAACCAACATGGGATTGGACTGCACCAGTTCAAGATCAGGCA
TTAGTAGCTAAAATCAAAGAGCTTGCAGAAGCTGGCATGACAGAAGCTTACCAAATTGAAGTTAAGCAAGACCGTTATGT
ACAAGTCGGTATTGTTAAAGCTGCCGCGAAAGCTGCATTAGTTGCAGAGAATCCAGATGTTGATACTCGTGAAGTAGACA
ACTTACTTGGTAGTTTAGAGAAAAGCGTTGTACGTGGCCGTATTATCAGTGGTAAGCCACGTATCGATGGTCGTGAACCA
GATATGATCCGCGCGTTAAGTGTTTTAGCGGGTGTACTTCCACGTACTCACGGTAGTTCATTATTTACTCGAGGTGAAAC
TCAAGCATTAGTTACCTGTACATTAGGTACTGAACGTGATGCTCAGAAAATTGATAGCATCATGGGCGAACGTACTAATC
GCTTTATGCTTCATTATAACTTCCCTCCGTATTCTGTTGGTGAAACAGGTATGGTTGGTTCACCTAAGCGTCGTGAAATT
GGTCATGGTAAGTTAGCATGGCGCGGTATGAATGCCGTTATGCCTTCTGCTGAAGAATTCCCATACAGCATTCGTGTTGT
ATCTGAGATTACTGAATCTAACGGTTCAAGCTCTATGGCTTCAGTATGTGGTACTTCATTAGCATTAATGGATGCCGGTG
TACCGATTAAAACTTCAGTTGCTGGTATTGCAATGGGTCTAGTTAAAGAAGGCGACGATTTCGTTGTACTTTCTGACATC
TTAGGTGATGAAGATCACTTAGGCGATATGGACTTTAAAGTAGCTGGTACTCGTGATGGTATTACTGCTCTGCAGATGGA
TATCAAGATTGAAGGTATCACTAAAGAGATCATGGATATTGCACTGCAACAGGCTTATGGTGCACGTGTTCATATCCTAA
ACGTGATGGACCAAGCTATTGGCACACATCGTGGCGATATCTCTGCTCATGCTCCACGTATCACTACCATCAAGATTAAC
CCTGAGAAGATCCGTGATGTTATTGGTAAAGGCGGTGCGGTAATTCGTGCGCTAACCGAAGAAACGGGTACTACGATTGA
GCTTGATGACAATGGTACTGTGAAGATTGCCTCTTCAAACGGTGAAGCAACTAAAGAAGCTATCCGTCGTATTGAAGAAA
TTACTGCTGAAGTTGAAGTGGGTCGTATCTACAACGGTAAGGTTATTCGTATCGTTGATTTCGGCGCATTCGTTAACATT
CTTCCTGGTAAAGACGGTTTAGTACACATTTCACAAATCAGTGATGAACGTGTTGCTAACGTGTCAGATCATTTAGAAAT
GAACCAAGAAGTAGCTGTTAAAGTTATGGAAGTGGATCGTCAAGGTCGTGTAAGACTATCAATTAAAGAAGCTCAAGCGA
AAGAAACTGCTGAGTAA

Upstream 100 bases:

>100_bases
GATTTTCACATTCTGTAACTCGCGTCTATTTAACTATTCAGCTGAATTGAAGTATACTTGTGCGCGTAATTAAAGGTCAT
TAAATTAAGGAATGGGTCAC

Downstream 100 bases:

>100_bases
TGTAATTTAAAGGCTTAACGACAAAAAAGGAGATCATTTGATCTCCTTTTTTTTATCTACAAAAAATAATCTGTAATGTG
CATGGCTCTTAGATTGCCAG

Product: polynucleotide phosphorylase/polyadenylase

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>698_residues
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKVADLSRDFFPLTVNYQEKTYAAGKIPGGFFKRE
GRPSEDETLIARLIDRPIRPLFPNGFKNEVQVIITVVSVDPQIEPDIVSMIGTSAALAISGIPFSGPLGAARVGYINDEY
VLNPTVDQLATSSLNLVVAGTKAAVLMVESEAKALAEEIMLGAVTYGHDQQQVVVDAIAEFKAEAGKPTWDWTAPVQDQA
LVAKIKELAEAGMTEAYQIEVKQDRYVQVGIVKAAAKAALVAENPDVDTREVDNLLGSLEKSVVRGRIISGKPRIDGREP
DMIRALSVLAGVLPRTHGSSLFTRGETQALVTCTLGTERDAQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREI
GHGKLAWRGMNAVMPSAEEFPYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMDIALQQAYGARVHILNVMDQAIGTHRGDISAHAPRITTIKIN
PEKIRDVIGKGGAVIRALTEETGTTIELDDNGTVKIASSNGEATKEAIRRIEEITAEVEVGRIYNGKVIRIVDFGAFVNI
LPGKDGLVHISQISDERVANVSDHLEMNQEVAVKVMEVDRQGRVRLSIKEAQAKETAE

Sequences:
NA

Specific function: NA

COG id: COG1185

COG function: function code J; Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA