Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114561796

GI number:

Start: 713278

End: 715599

Strand: Direct

Name: Not Available

Synonym: Sfri_0611

Alternate gene names: NA

Gene position: NA

Preceding gene: 114561795

Following gene: 114561797

Centisome position: NA

GC content: NA

Gene sequence:

>2322_bases
ATGAAGTCGAGTAATTACAGTAAGTTATCATTAGGTGCTCAAGCTGTTGCTGCAGCATTAGTATTCAGTAGCCCAGCGCT
ATATGCCGCAGACACCAAAAATGAAACTTGTGATAAGGATATATTGGCAAAATGTAAACCAGCGCAAACAGACGAATCTA
TTGAGCGAATTCGTGTTCATGGTGTGCAAAACTCGGTTTACATGTTTAATAACTCAGCCGACAAACGCCGTATGGCTGCA
CTTGTCGATACGCCGCAAGTGATTACCGTGTTAACTCAAGACCAAATTCAAGAGTCAGGAAATACGGACTTAAAAGACAT
TTTGTCAGCTCAAGCGGGTGTTACTCTTGGTACTGGTGAAAACGGTAATGCATTCGGTGATCGTTATATTATCCGTGGCC
ACGAAGCACGTAGTGACGTGTTTGTTGATGGACTTCGCGACCCTGGCATGACCACTCGCGAAAGTTTTGCTACCGAGCGA
GTTGAAATTACCAAAGGTCCAAGTTCAACATTTGCTGGCCGTGGTTCATCAGGTGGTGCCATTAATAGTGTGACTAAAAA
AGCCTCAGTAGCTTACGATTTTGGTCGCGTCGATTTGGGTATTGGTACTGACGATCACACTCGTCTAACGGTGGACTATA
ACTTACCGATATCAGACAAAGTGGCAGTACGCCTTAACGGATTAACGGCTGAAGAAGACAAACCGGGCCGCGAAGGTATT
ACGAGTGAACGCCAAGGTGTTCAGTTATCGGGTGTGTATGAAGCCACCGATGCATTGTCGTTTACTGCCGATGGTTACTA
CCTAGACGCGAAAGATGTGCCAGATTTAGGCAGTTATTTTGATCGAGATACTCGTAAGCCGCTAGAAGATATTCCTGTTT
ATGCTCAAGATGGTGATTTTCTAAATTCTAAGGTCACCACGTTCACTTTACGTACCGAATATGAGTTAAATGACAGCATT
ACGTTGTACAACGCCACACGCGTTGGACATACCGAAAATGGCTATATTACAACAGGGATGGGCGGCACAACGCGCGCAGA
TACCGACCCAACAGCGCCTGGAGCAAGCACGTTAACGCTTAGTACTCACCAAGGTAACCAAGATGTTGATTATGTCAGCA
CTCAATTCAATTTATTTTGGAACACCCAAGCACTTGGTTTTGATCACAAGTTAGTGTTTGGCCTTGAATACACAGATGAA
AATGTTGATAACGGCGTATATAGCATCACCAACAATAATGATGGTAATTGTTTGACCGAGGGTCGCCGTGGTGTATCAGA
GGCTTATTGTATTATTGATGGTAACGGCAATACTGTCGACAATATCGGCCAGTTAATGAATCGCAGCTATGTTGATGGTG
GATCTGATGCTATATACGACATCGAAACCGTGTCGGCATACATGATGGATACGGTTGAATTGACCGATCAGTTAGCACTA
TTCTTTGGTTTTAGACAAGACAGCTTTGATTACAGTAACAACACAACAGGTCGCGATGGTGAAGTGGATTATGCCTATTC
CGATACCATGTATAACGGTAATATTGGCTTAGTTTATGACTTGTCTGAAGATGCCAATATCTACGCCAACTACAGTACTG
CAACCAACATCAACGGCGGAGAGTCTGATTTAGGTGCTAACTGTGGTTACGGTGGTATTTGTGGTACGCAAGAGCAAGCT
GCTGAAGCTGATGCCGAAATTGTTGAAAACCTAGAGCTCGGTACCAAGTGGATGTTGTTTGATGACAAAATGATGTTTTC
GGCATCGATTTTCCAAATCACTAAAAGTGATGTAATGGAAAGTGTTGGCGACAGTTACTCAACGCTAGGTACACTTAACA
CGGGTAAAAACCGCGTTAAAGGCATTGAGTTTGGCATGGTCGGCAATATTACTGACAAGCTCAGCATACAATTCTCGGCT
GCCAAAATGGATTCAGAAATTTTAGAGTCTTACAATCCAGCTAACATTGGTTTAGTACTAAGTAACTTTGCTGACGAAAG
TGCTTATTTGCAACTGCGTTATGAGCTAACCGAATCATTTGTATTTGGTGGTAGCTACACTTATCAAAGTGAAATGTATG
GCGGACAACCAGACACTGCAGCAGGTTATGATAGCGACAATAGCCGTTACAGCATTGTGGTGCCTAACTATCAAGTAGTT
GATTTATTTGCCAGTTACAATGCCACTGAGGATTTAACTTTCCGCATAAACGTAGGTAACATATTGAACGAAGAATATTG
GACTGCAGCTTATCGTTCTGGCTCATTTATGTACTTAGGTGACGCCCGTAATGCTAAATTGTCGATGACATATGAGTTTT
AA

Upstream 100 bases:

>100_bases
TGATAATGATTTGTATTTGCGATCCTTGTTTCATTTATGTAAAGTGCATCACATAAATGAAATTTAGTTAACGCTTATTA
ATAACAGGATGATGTTAAGC

Downstream 100 bases:

>100_bases
TTAAAGGTATTTGCATGATTGTTATTGAACAAATTCTCTCGAAACAGGATGTCGGTGCTTATCGTCAGCAACTGGCTGAA
TGTCCGTGGGGAGACGGTCG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>773_residues
MKSSNYSKLSLGAQAVAAALVFSSPALYAADTKNETCDKDILAKCKPAQTDESIERIRVHGVQNSVYMFNNSADKRRMAA
LVDTPQVITVLTQDQIQESGNTDLKDILSAQAGVTLGTGENGNAFGDRYIIRGHEARSDVFVDGLRDPGMTTRESFATER
VEITKGPSSTFAGRGSSGGAINSVTKKASVAYDFGRVDLGIGTDDHTRLTVDYNLPISDKVAVRLNGLTAEEDKPGREGI
TSERQGVQLSGVYEATDALSFTADGYYLDAKDVPDLGSYFDRDTRKPLEDIPVYAQDGDFLNSKVTTFTLRTEYELNDSI
TLYNATRVGHTENGYITTGMGGTTRADTDPTAPGASTLTLSTHQGNQDVDYVSTQFNLFWNTQALGFDHKLVFGLEYTDE
NVDNGVYSITNNNDGNCLTEGRRGVSEAYCIIDGNGNTVDNIGQLMNRSYVDGGSDAIYDIETVSAYMMDTVELTDQLAL
FFGFRQDSFDYSNNTTGRDGEVDYAYSDTMYNGNIGLVYDLSEDANIYANYSTATNINGGESDLGANCGYGGICGTQEQA
AEADAEIVENLELGTKWMLFDDKMMFSASIFQITKSDVMESVGDSYSTLGTLNTGKNRVKGIEFGMVGNITDKLSIQFSA
AKMDSEILESYNPANIGLVLSNFADESAYLQLRYELTESFVFGGSYTYQSEMYGGQPDTAAGYDSDNSRYSIVVPNYQVV
DLFASYNATEDLTFRINVGNILNEEYWTAAYRSGSFMYLGDARNAKLSMTYEF

Sequences:
NA

Specific function: NA

COG id: COG4774

COG function: function code P; Outer membrane receptor for monomeric catechols

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA