Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114561602

GI number:

Start: 448276

End: 452736

Strand: Reverse

Name: Not Available

Synonym: Sfri_0415

Alternate gene names: NA

Gene position: NA

Preceding gene: 114561603

Following gene: 114561599

Centisome position: NA

GC content: NA

Gene sequence:

>4461_bases
GTGTCTGTTTCAGCGCAAAAAAATGATCCTTATGACAGCCTAACCGAAGTAAAGTTTGATCACTTCAGTACCGAGGGAGA
CCTTAATCAAAACTCAATTACTCGTCTGTTTATGGACAGTTCTGGCATGTTATGGATAGGAACTCAAGACGGTCTACACA
GCTATAATGGTGTTGAGTTTGATTTATACTTAAAACAGTCAAAAAATATCAACTCTATCTCAGGCAATTTTATCACAGAT
ATTTTGCAGTCACCTGACGGCGATTTATGGATAGGCACCTTCAACAATGGACTCAATAGACTCAACCTCACTACAGGGGA
ATTCACTGCGTTTAAACAACCTCAAGGCTTAACTGAGCTTCAGGTAACCCATCTTGCAGTGATTGGAGATACCTTATGGG
TGGGAACGCGTTCGGGTCTGTACATATTATCCTTAAAAACCGAAAAAATTATTCCTGTCAGTTTAGGTAATAATATCACT
CCAAATATAACCAGCATTGCCAATATTGACGATAAATATATTGTCATAGGCACTCAATCACATGGCACATTTGCCATTGA
TAGTAATACCATTATTCGGCTTGATATCCCGGTCAATATGACGGTAAACCAAATCAAATCCAGCTCTGTTTATTCCGTCT
GGCTAGCCATCGACAACCAAATTTGGCGTTACAATCTCGATACTCATAAAAAAGAATTAATATGGTCGCATGACAATGGT
TTGGGTAATAACCGTAAGATTATTGATTTTGTCGTGGTGAATGCCAATCAGATATTTGCTATCGGCAACAATACAGGCTT
ATTCAAACTCGATTTTATTGATGGTAAGTGGCGCAGCACGCTTTATAAGCATAATCCGCAAAAACTCAATACCATCAGTG
CTAATACCCTGCAAAACCTAATGCTAGATCAAAACGGCACCCTATGGATTGGTACAGGTTATTCGGGCATCGATAAACTG
AATCTCAGCCATCAATATTTTAGCCACTTTTACGACTACCAAACTAATGCTCCAGGCATGGCAAACATGATCCGCGTGAT
TTTGCGGGATACACAGCAACGCCTATGGATAGGTACCGATGGTGCGGGGCTTAAGTATTTGGCCCCCAATGATAACCAAT
ATCACTATATCAACGATTTATTTGCAAAAAAATTAGCAATACCAACAGAACAATTATCGTTGATAGTGCATGATATTAAA
CAAGATAAACAAGGTGTACTGTGGTTTGCCACCAATGTAGGGCTGTTTACCTTAGATAAGAGTAATACCCTGCAGCAAAT
TAAACCGGCAAACGGACAATTTCATACCGATACCCAGATCCGCAGCTTAGCCTTTGATGACAAAGACCGTTTATGGATAG
CCAGCTCACAAGGTTTGTATTTTATCTCTGAATATACAAATCGTATGATGGCTTATAACTTTGGCTTTCAGGCTGATTTC
TCACCATTCAAATACCAAATTATTAGGCTCTATTTTAGCCAGGGTTATTTATGGCTCGGCACAATGGGCGGAGTGGTTAG
GCTTTCAGTTGAAGAACGAAAACTAGATTTTTTAAGCCATGACTCAGAAAATCCTTACAGTCTTAGTGACAATCGTGTGA
GAGACTTTTTACAGGCAGAAAATGGCGATTTTTGGGTGGCCACTCATGGTGGTATAGACAAGCTAACAGTTGAATATGGT
ACGTTTAAATTTGAACGAATGGACGTCAATGCTGATAACAGCAGTAATACGGTTTATGCTATTTTAGAAGACGATAAGCA
TGATTTGTGGCTAAGTACTAACTCGGGGGTTTCACGTTTTACTCCTAGTACTCGAAGCTTTATTTCCTATAATAAATTCG
AAGGTTTGCAAGCCAATGAGTTTAATGGTGCAGCCAAGTTTAAAGAGCTTAACGGTACCTTATGGTTTGGTGGTATTCGA
GGCCTTAACCAGTTTAATCCAAGCACTATTCCAAGCCAAAGAGCTGAAAACAAACTGGCACTGACAAAATACACTATTGG
TGAAACCCAACACCCTATTCGCGACTTAAGCCATGCTCCGCGCATTATCATGCCTTATGAACAACAACTCATCAGCTTTG
AGATCGGCTCACTCAATTTTAGTTACCCTGGATTAAGCCGTTTTAGCTACTTTTTAGACGGTTATGATAACGATTGGCGT
GAACTATCCCATGGTAACGAAATCACTTATACCAACTTACCACCGGGTGAATACAAATTAGCGGTTCGCCATGCGCTAGG
AACGAATAGATACAGTGAATACACCCTCAATGTGAATGTGTCAGTAGTGCCACCAATGTATATGACCAGCACAGCCTATA
TACTGTATGTGACAGTCGGGTTATTGATTATTATTTGGTTTTTTTATGCAAGACAGAAAAAAGTGGCCAAGCAGCGCGAA
TTTGATAACAGTATTCGCGCCTCTGAAGAGCGACTAAAACTGGCACTTTGGGCCTCTGGTGACGGAATGTGGGACTGGAA
CATTAAAGACGATAAAGTCTATCGCACCAACATGGTCGAGCCGATGAGTTTTTCGTTAAAAGATCAATTATTGATTAAAA
ACATTGATCCGGAAGACAGACCACGAGTGCAAAAATTGCTTAACGATCACCTCAATGGTGAAAGTGAGTTTTTTGAAGCA
GAGTATCGCGTTGAAACTAAACCCGGACAATGGGCTTGGGTGCTCGACCGTGGCCAAATTGTTGAACGTGATAGCAATAA
TATTCCAGTGCGAATGGCCGGAACTCATAAAGACATTACTAGCCGAAAGATCACAGAAAACGAACTTAAGCTATCATCAC
AAGTACTGTTTAGCATGAACGAAGCCGTTGTCGTCGGTGAACTGGACTATCAAATACGCTCAATAAATCCAGCATTTAGC
CGCATTACTGGCTTTAAACACCGTGATGTTGTCGGTAAGCATTTCTTGTTTTTAACCATGGGAAAGCAGTCGCGCGAGTT
TTATAACTCAGTTGAAACCCAACTATTAAGACACAAACATTGGGCCGGTGAAATTCACATTAGAACCCGCAACCGTCGCG
GCATTCTTGCATGGCTAGAAATCAACCAAGTTATCGATAATAAAGGTGAAACAAGTCACTTTGTGGCAGTATTCACCGAT
ATTACAGCACGTAAAAAAGCCGAAGAAGATTTACGAGTACTGGCTAACTTCGATCCACTGACTGGACTGCCTAACCGCAC
TTTATTCCAGGACCGGCTCAATCAAGCCGTGACTAAAGCACACCGTGCCAATAGCATCGTGGCATTGTTATTTTTAGACC
TTGACCGATTTAAACATATCAATGATTCAATGGGGCACCACATCGGTGATTTACTGCTTAAAGCCGTCGCACATCGCCTG
CAAAATGCAGTTCGAGATGGTGATACTGTTGCACGCTTAGGTGGGGATGAATTTACCATTATTTTAGAAGGCGTTGCCAA
AACGAAAGCCGCCACCATTATTGCCGAAAAAGTGTTACATGCTTTTCAAACACCTTTTTTACTTGATGATAAAATACTGA
CTATCTCACCGTCTATTGGTATCAGTTTGTACCCAGAAGATGCAGATGATACCACCTCATTAATTAAGTATGCTGATACC
GCCATGTATCACGCAAAATCACTGGGACGCAATAACTTCCAATTTTATACCGAGCAATTAAACCAATATGCAACACGTCA
TGTTCAGTTAGAGGCTGGTCTTAAAAAAGCGATTCAAGACAATGAGCTATATTTGGTTTATCAACCTAAATATGATGTAA
AAACTGAAAAAATTATCGGACTGGAAGCGTTAATGCGCTGGGAAAGCCCAGAACTTGGTTTTATTTCACCGGTTGAGTTT
ATTCCGCTAGCAGAAGAAACAGGCATCATTAATCAGATTGGTCATTGGGCTATTCAACAAGCCTGTAACCAACTGGCGCA
ATGGCACCAACAAGGGTTTGAGCATATCTCTATTGCCGTTAACCTTTCAGCCAGACAATTGAAGGCCGATATCATTTCGA
CTATAGAAGTCGCATTAGCGGTATCTGGATTACCGGCAAGTGCTCTAGAACTCGAATTAACCGAGTCAATGATTATGGGT
AACCCACAAGATTCAGTGACCGTGTTATCGCAGCTCAAAGCCTTAGGTTTGACCATTGCTATTGATGACTTTGGTACCGG
ATACTCAAGCTTAAGCTATTTGAAACGCTTCCCAATTGATACCTTGAAGATTGATCGTGAGTTTGTGCGTGATATAACTG
AAGATCCTGACGATGCTGCCATCACTAGCGCCATTATAACCTTGGCCCACAGTTTAGAGCTTAACGTTGTGGCTGAAGGC
GTTGAAACCCAAGCGCAATTGAATTTCTTACGTGAGGGAGGTTGTGATCAAGTGCAAGGCTTCTTGCTCAGTAAACCACT
GAGTGCGGTTGATTGCCTGGCATTATTAACGCAAGACAAATCAGAGGTTAGCCATTCATAA

Upstream 100 bases:

>100_bases
ACAGCCTTCCCAATGAATTTTTTATAGGTGAAATTTGAATTTTCGTGCATTCACGCTTTTAACACACTGGCTAATTTTAG
TCATAACATTGAGTTTTTCA

Downstream 100 bases:

>100_bases
GGCAAAATAAAAGCTCCATTTAGGAGCTTTTAAGTGTATTTTATTGATTAAATAAACTACGGAGCAACACGTTCAACGCG
TTTTACCCAGCCTTGCGGTG

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>1486_residues
MSVSAQKNDPYDSLTEVKFDHFSTEGDLNQNSITRLFMDSSGMLWIGTQDGLHSYNGVEFDLYLKQSKNINSISGNFITD
ILQSPDGDLWIGTFNNGLNRLNLTTGEFTAFKQPQGLTELQVTHLAVIGDTLWVGTRSGLYILSLKTEKIIPVSLGNNIT
PNITSIANIDDKYIVIGTQSHGTFAIDSNTIIRLDIPVNMTVNQIKSSSVYSVWLAIDNQIWRYNLDTHKKELIWSHDNG
LGNNRKIIDFVVVNANQIFAIGNNTGLFKLDFIDGKWRSTLYKHNPQKLNTISANTLQNLMLDQNGTLWIGTGYSGIDKL
NLSHQYFSHFYDYQTNAPGMANMIRVILRDTQQRLWIGTDGAGLKYLAPNDNQYHYINDLFAKKLAIPTEQLSLIVHDIK
QDKQGVLWFATNVGLFTLDKSNTLQQIKPANGQFHTDTQIRSLAFDDKDRLWIASSQGLYFISEYTNRMMAYNFGFQADF
SPFKYQIIRLYFSQGYLWLGTMGGVVRLSVEERKLDFLSHDSENPYSLSDNRVRDFLQAENGDFWVATHGGIDKLTVEYG
TFKFERMDVNADNSSNTVYAILEDDKHDLWLSTNSGVSRFTPSTRSFISYNKFEGLQANEFNGAAKFKELNGTLWFGGIR
GLNQFNPSTIPSQRAENKLALTKYTIGETQHPIRDLSHAPRIIMPYEQQLISFEIGSLNFSYPGLSRFSYFLDGYDNDWR
ELSHGNEITYTNLPPGEYKLAVRHALGTNRYSEYTLNVNVSVVPPMYMTSTAYILYVTVGLLIIIWFFYARQKKVAKQRE
FDNSIRASEERLKLALWASGDGMWDWNIKDDKVYRTNMVEPMSFSLKDQLLIKNIDPEDRPRVQKLLNDHLNGESEFFEA
EYRVETKPGQWAWVLDRGQIVERDSNNIPVRMAGTHKDITSRKITENELKLSSQVLFSMNEAVVVGELDYQIRSINPAFS
RITGFKHRDVVGKHFLFLTMGKQSREFYNSVETQLLRHKHWAGEIHIRTRNRRGILAWLEINQVIDNKGETSHFVAVFTD
ITARKKAEEDLRVLANFDPLTGLPNRTLFQDRLNQAVTKAHRANSIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRL
QNAVRDGDTVARLGGDEFTIILEGVAKTKAATIIAEKVLHAFQTPFLLDDKILTISPSIGISLYPEDADDTTSLIKYADT
AMYHAKSLGRNNFQFYTEQLNQYATRHVQLEAGLKKAIQDNELYLVYQPKYDVKTEKIIGLEALMRWESPELGFISPVEF
IPLAEETGIINQIGHWAIQQACNQLAQWHQQGFEHISIAVNLSARQLKADIISTIEVALAVSGLPASALELELTESMIMG
NPQDSVTVLSQLKALGLTIAIDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITEDPDDAAITSAIITLAHSLELNVVAEG
VETQAQLNFLREGGCDQVQGFLLSKPLSAVDCLALLTQDKSEVSHS

Sequences:
NA

Specific function: NA

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA