Definition Shewanella frigidimarina NCIMB 400, complete genome.
Accession NC_008345
Length 4,845,257

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Identifier: 114561226

GI number:

Start: 47851

End: 50334

Strand: Direct

Name: Not Available

Synonym: Sfri_0038

Alternate gene names: NA

Gene position: NA

Preceding gene: 114561223

Following gene: 114561229

Centisome position: NA

GC content: NA

Gene sequence:

>2484_bases
TTGCCTCGGTTGCCGAAACTTTCTCTGTCTTTGCTTGTTCCTGCATGTATTTTTATCCTTTACCTTGGCTTGGTATGTGG
GGAGTATTTCTATGAGCATGCAGAGCTAAATGAACAACTTGCATTAAGACAGTCAGAACAAATACAGAAAGATTTATTTA
GAATGCGTCATGTTGTGGAATCATCTCTGTTGACGCAAGATTTAGAACGAATAGAGCAAGAGGTTGCTTTAGTCTCAACA
GACCAAAACATGATGGTGTATGTAATACTTGATTCGGGTAGTGAAATTCAATTTGCCAATCATATTATTTGGCGAGAAAG
TAATGCTACTAATGTGTTAGAGGGCTATTCGGCTGATTTACATAGAACGGTTATCACCAATAATAAACCTTTTTTAAAGG
TGAATTTCGATCGTTTATCAATTCAGGCTTACTATCCCCTTAATGCAAATTCTCGTTACAGCTACTCGAATTCTGTAGAG
CTAATTTATTTAGAATATGACATTGCCAATGTCTTATCAGAAGCGGTTGATAGTCTGTTAAAGCGCTTTATCGAGATATG
GGGAATTGGCGCTTTATTGTTGTCGTTATTCTGTGTCATGTTGCATTATTTACTGATAAGACCGTTAACTCAATTAAGCC
AAGCCGCTAAAAATCTCGATTCTCCAGATTTCAATACTGATATTGTGTGCACATCGACCGAACTGGTTAACTTACGCGAC
TATTTGAATCAGGTTAATGGTCGGTTATCCCGCAGTAAAAAACGTCTAAATGATGCAGAGCAACGTTGGCTTTTTGCAGT
TGAGGGCGCTCGTAATGGTATTTGGGATTGGTGTATTGCTACTGGCGATGTGTTTGTTTCTGATCGATGGAAAGATATCT
TAGGCTACCAACCTTATGAGCTAGATAATGACTATTCTGTCTGGGAGTCTCGTTTACATCGAGATGATAAGGCGCAGGTA
TTAAATACCTTACAGAATTACATTAATAACCAGCATGAATATTATGAAAGCGTGCATCGTTTACGTCATAAAGACGGTCG
TTATATTTGGATTTTGGATCGTGGAAAAATAGTTGAGTGGGATGAACTTGGGCGTCCATTACGAATTATTGGCACCATAA
CAGATGTTTCTGGTGATGTTAAAAGCCAACAAATTACTCCTGATAAGCAGGGACATAGTGGCCTCACGGATTTAATAAAT
CGTGATGTATTAGCCGATCAGCTTTATGATTTACAGGTTCTTAGTCGCAAGACTGGTCAGTTTTCTGCGCTTCTTATGAT
CAATTTAGATAATTTTAAATTAATTAATGATGCTTTGGGTCACCAACTTGGCGATAGATTATTAATGCAGATAGCAGCCC
GCTTATCTGGTACATTCTCTAGTGCTGGTTTGGTTGCTCGCCTTGGAGCAGATGAGTTCGTTATTCTAGCCAAAAATTTT
GGCAATGAAATTGATCAACCAAGTAAACGTGCATTAGCACTGGCTAGTGAAGTGAGGCAGTTAATTGGCCGCGGTTACAC
CATTTCAGAGCAAAATTTATCAATTTCAGCTCGGATTGGGTTAGTTGTTTTTGATGGTATTGAGTCATTAGAACCTCAAG
TACTGTTGGCTCGTGCAGATAGCGCTATGGAGCAAGCAAAAGATAGTCGCTCTAATGGTTGTGCCATTTACCAACCTGAA
TTAGATCAAAATCAAGTTCAACCATTCAAATTACAAAACGAGCTGAAACTGGCTATCCAGAACAAGCAGATGTCATTGGT
TTATCAACCCGTTGTTGATCAGGCTGGGCAGCTCAATAGCATTGAAGTACTAATGCGTTGGTATCACCCGCAGTACGGAT
ATATTAATCCACGTAAGTTTATTGCGTCAGCTGAACTGTCTGACTGTATTTTTGAATTAGAGCTGTGGGCATTAGATCAA
GTCTGTGAACTTATTCAAACACTTCAACAGGCAAACGCGACAGTGCCTTTAATGTCATTAAATGTATCTTCTCGTCACTT
TCATCAAGATCACTTCGTAAACGTAGTAATGAATCGAATCAATGCAGCACATGTCTCAGCTACATTGTTTCAGTTCGAGT
TATCTGAAGATGTATTCGTGGTCAATGCTAATGTTGCCAGAAACAAAATTGCTGAGTTCCAACGATTCGGTGTGAACATT
GCGATGGATAATTTTGGTGGGGGATCTTGCGCAGTCCATTTATTACAAGGTATTCGTTTTTCACAAGTGAAGCTAGCTGC
TGTCTATATTGAAGATATAGAATATAACCCTGAAACCTTTAACATTGTGAATGCCATTGTTGAGTTTGCTACTAAGTTAA
ACTTTCCTGTAGTGGCTAAACAAGTTGAGAATAAGCAGCAACTTAATTTACTGACCCATGCAAAATGTACTTGGTTTCAA
GGCTATATTATCAGTCGACCACTAGCTCATGACGACATTATTCAATTAATTAAGACACAGCTATCTTTGAGTGTTGTGCC
ATAA

Upstream 100 bases:

>100_bases
TTTTATGTCGGATATGCTATTAGGATTCATAACTAGTACTTTACTTATTGATAAGATTACCGCTAGCATATCTTCATATA
TTTAATTGGATGGGTTTATT

Downstream 100 bases:

>100_bases
AGTCAATGGTATGAGACAGGGCGATATTACGCATAGTATCTTTCTCGATGAATACTTCGTGATATGCGCCTTCAATGATC
ACTTTATGACAATGAGTGCT

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>827_residues
MPRLPKLSLSLLVPACIFILYLGLVCGEYFYEHAELNEQLALRQSEQIQKDLFRMRHVVESSLLTQDLERIEQEVALVST
DQNMMVYVILDSGSEIQFANHIIWRESNATNVLEGYSADLHRTVITNNKPFLKVNFDRLSIQAYYPLNANSRYSYSNSVE
LIYLEYDIANVLSEAVDSLLKRFIEIWGIGALLLSLFCVMLHYLLIRPLTQLSQAAKNLDSPDFNTDIVCTSTELVNLRD
YLNQVNGRLSRSKKRLNDAEQRWLFAVEGARNGIWDWCIATGDVFVSDRWKDILGYQPYELDNDYSVWESRLHRDDKAQV
LNTLQNYINNQHEYYESVHRLRHKDGRYIWILDRGKIVEWDELGRPLRIIGTITDVSGDVKSQQITPDKQGHSGLTDLIN
RDVLADQLYDLQVLSRKTGQFSALLMINLDNFKLINDALGHQLGDRLLMQIAARLSGTFSSAGLVARLGADEFVILAKNF
GNEIDQPSKRALALASEVRQLIGRGYTISEQNLSISARIGLVVFDGIESLEPQVLLARADSAMEQAKDSRSNGCAIYQPE
LDQNQVQPFKLQNELKLAIQNKQMSLVYQPVVDQAGQLNSIEVLMRWYHPQYGYINPRKFIASAELSDCIFELELWALDQ
VCELIQTLQQANATVPLMSLNVSSRHFHQDHFVNVVMNRINAAHVSATLFQFELSEDVFVVNANVARNKIAEFQRFGVNI
AMDNFGGGSCAVHLLQGIRFSQVKLAAVYIEDIEYNPETFNIVNAIVEFATKLNFPVVAKQVENKQQLNLLTHAKCTWFQ
GYIISRPLAHDDIIQLIKTQLSLSVVP

Sequences:
NA

Specific function: NA

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA