Click here to switch to the map view.

The map label for this gene is hslR [H]

Identifier: 114332471

GI number: 114332471

Start: 2652928

End: 2653338

Strand: Reverse

Name: hslR [H]

Synonym: Neut_2524

Alternate gene names: 114332471

Gene position: 2653338-2652928 (Counterclockwise)

Preceding gene: 114332472

Following gene: 114332470

Centisome position: 99.71

GC content: 54.74

Gene sequence:

>411_bases
ATGACTGAAAAGAGTGCACAGGCCACAGATGAGAAACTCCGCATCGATAAATGGTTGTTTGCTGCCCGTTTTTACAAGAC
GCGCTCGCAAGCCGCTGATGCGGTTGAGCGTGGCCAGGTGCAAATTAACGGCATGCGGGTGAAGCCATCCAGAATCCTGA
ACGTAGACGATATGCTCGATATTCGCATCGGGCCGTATCATCATCGGGTGAAAGTGCTGGCATTGTCCAATCAGCGTCGA
TCTGCTACGGAAGCTCGCCTACTTTATCAAGAAACAGAAGAAAGCCGACAAGCGCGCGAGATGCTGGCAGGAGAGCTCAA
ATCGCAGCCAACGCCACCGCGTTACGCTGGTAAAGGTCGGCCGACCAAGCGTGTGCGGCGCGACCTGGAGCGCTTTGTGG
ACGGGAAATGA

Upstream 100 bases:

>100_bases
AGCTGGAACGTGGTTTCGCTATTCTGACTTGGTGCATTGCGCTCAGTATGCTTATCAAGGGGCTTATGCTTTTTATTGAC
CTATTCACCCCGGATATGCC

Downstream 100 bases:

>100_bases
CTTCCCTGGCTGTCCGTGCACAAACTCTGCTCAGAGAAATCTTTGGTTACACCGAATTTCGCGGGCAGCAGGCTGAAATC
ATTACCCATATCGCAAACGG

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 136; Mature: 135

Protein sequence:

>136_residues
MTEKSAQATDEKLRIDKWLFAARFYKTRSQAADAVERGQVQINGMRVKPSRILNVDDMLDIRIGPYHHRVKVLALSNQRR
SATEARLLYQETEESRQAREMLAGELKSQPTPPRYAGKGRPTKRVRRDLERFVDGK

Sequences:

>Translated_136_residues
MTEKSAQATDEKLRIDKWLFAARFYKTRSQAADAVERGQVQINGMRVKPSRILNVDDMLDIRIGPYHHRVKVLALSNQRR
SATEARLLYQETEESRQAREMLAGELKSQPTPPRYAGKGRPTKRVRRDLERFVDGK
>Mature_135_residues
TEKSAQATDEKLRIDKWLFAARFYKTRSQAADAVERGQVQINGMRVKPSRILNVDDMLDIRIGPYHHRVKVLALSNQRRS
ATEARLLYQETEESRQAREMLAGELKSQPTPPRYAGKGRPTKRVRRDLERFVDGK

Specific function: Involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=128, Percent_Identity=46.875, Blast_Score=101, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 15753; Mature: 15622

Theoretical pI: Translated: 10.97; Mature: 10.97

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEKSAQATDEKLRIDKWLFAARFYKTRSQAADAVERGQVQINGMRVKPSRILNVDDMLD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHCCCCHHEE
IRIGPYHHRVKVLALSNQRRSATEARLLYQETEESRQAREMLAGELKSQPTPPRYAGKGR
EEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PTKRVRRDLERFVDGK
CHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TEKSAQATDEKLRIDKWLFAARFYKTRSQAADAVERGQVQINGMRVKPSRILNVDDMLD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECHHHHCCCCHHEE
IRIGPYHHRVKVLALSNQRRSATEARLLYQETEESRQAREMLAGELKSQPTPPRYAGKGR
EEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PTKRVRRDLERFVDGK
CHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]