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The map label for this gene is yjbJ [C]

Identifier: 114332317

GI number: 114332317

Start: 2479922

End: 2480119

Strand: Reverse

Name: yjbJ [C]

Synonym: Neut_2359

Alternate gene names: 114332317

Gene position: 2480119-2479922 (Counterclockwise)

Preceding gene: 114332318

Following gene: 114332316

Centisome position: 93.2

GC content: 38.38

Gene sequence:

>198_bases
ATGAACTGGGATCAAATTAAAGGTAATTGGACACAGGCCAAAGGTAAAGTACAGCAACAATGGGGCAAGTTGACCGACGA
TGATCTCGATATTGTTGAAGGAAAGCGTGAAGAGTTAATTGGCAAAATTCAGGAAAAATATGGTATTGCAAAAGAAGAAG
CTGAAAAGCAGGTGGATGATTTTTGCAAAAAAGGCTAA

Upstream 100 bases:

>100_bases
AGGACGACGCCCGCCACCTATGTAATTTTGTTGTGACTACATGTCATGGGAAATACTAGATAAATTGTTTATTTCAATTT
TAATAAAAGGGGTATTCATT

Downstream 100 bases:

>100_bases
TTCAAGCAATTTTTTCACTGTGAAGAGGAAATCAAAATGAATAATCTAATGAAAACAATTTTGGCTTTAAGTGTTTTTCT
ATTTGTTATTGCAGCACCTA

Product: CsbD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MNWDQIKGNWTQAKGKVQQQWGKLTDDDLDIVEGKREELIGKIQEKYGIAKEEAEKQVDDFCKKG

Sequences:

>Translated_65_residues
MNWDQIKGNWTQAKGKVQQQWGKLTDDDLDIVEGKREELIGKIQEKYGIAKEEAEKQVDDFCKKG
>Mature_65_residues
MNWDQIKGNWTQAKGKVQQQWGKLTDDDLDIVEGKREELIGKIQEKYGIAKEEAEKQVDDFCKKG

Specific function: Unknown

COG id: COG3237

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0337 (CsbD) family [H]

Homologues:

Organism=Escherichia coli, GI1790479, Length=61, Percent_Identity=63.9344262295082, Blast_Score=80, Evalue=3e-17,

Paralogues:

None

Copy number: 12620 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 60 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 440 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008462 [H]

Pfam domain/function: PF05532 CsbD [H]

EC number: NA

Molecular weight: Translated: 7540; Mature: 7540

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWDQIKGNWTQAKGKVQQQWGKLTDDDLDIVEGKREELIGKIQEKYGIAKEEAEKQVDD
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH
FCKKG
HHCCC
>Mature Secondary Structure
MNWDQIKGNWTQAKGKVQQQWGKLTDDDLDIVEGKREELIGKIQEKYGIAKEEAEKQVDD
CCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH
FCKKG
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12835416 [H]