| Definition | Nitrosomonas eutropha C91, complete genome. |
|---|---|
| Accession | NC_008344 |
| Length | 2,661,057 |
Click here to switch to the map view.
The map label for this gene is msbA [H]
Identifier: 114332271
GI number: 114332271
Start: 2434986
End: 2436683
Strand: Reverse
Name: msbA [H]
Synonym: Neut_2311
Alternate gene names: 114332271
Gene position: 2436683-2434986 (Counterclockwise)
Preceding gene: 114332272
Following gene: 114332270
Centisome position: 91.57
GC content: 40.28
Gene sequence:
>1698_bases ATGCCAGATAAGCGGCTAGTGATTCAGATTGAACTGTTGAAGCGCTTTTTAACCTGGAATGGATCCCACTGGACATCCTT TATAATAATTATTGTTGTTGGTGGATTGGCTGCTATCTCAGCTTCATTAATCCCATTAATAGCAGGGCAATTATTTACTC AAATATTACCCGGAGGTAACCGGCAGTTACTGCAATCACTTCCTTTGATATTGGTGGTACTCTTGTTAGTAATCGTTATC GCCAGTTGGTCAGGATATTATGTGATTCATCGCTTGCTTGACGGGCTCATACTGGATATACGTGTGGAAATATTCAAGAA ATTACTGATATTGCCGCCAGCTTGTTCCGATCTTCCTGCTAACACAATTTCCTTATACTTCTTCAAATCTATAGAAAAGC TATATCGCAATGCTATCTCACTTGGAATCTGTTTATACAGAGATTCCCTGATTGTAGTCGGATTATTTTCAATAATGATC TGGCTGAATCCGGATATATCCTTTTTGATACTAACAGTGCTGGCTGCAGCGCTTTTAATCAGGCAAATATTTTATGCGAA TACTTATCAGCGAAGTATGCTGGATCAAGAACAACATGAAGTTTCCAGAGTGATATCCAAAACACTGCGACATAGCAGAG TTATCTTCTTGGATAAAGGTTATAAACAAGAGGTTGAGCGTATCCGAAATATGTTCAGGCAATTACAACTTACTTTACTG AGGCAGATCTATCAGACAGGACTACTGGAATTATTGGCCTCTATTTTCCTGGCAGGGATACTTACAGGGATTCTTTATTA TTTTTTGCAACAACTTGTTCTGAGCCAATTGACTGTAGAGGACGCTGTTGCATTTTTTACGGCAGGGCTGATGCTTGTTT TTCCGTTGAAGCGATTGTCTCATATCAATTTGTTACTGCAGCAATGTAATGAAGCATTGCACGTTATTTTTTCATTGTTG GATCAGAATTCTGAAATGGTTGTTGAAAATACTCTTGCTGTCCGGGTTGAACGTGCCAAGGGTAAGCTGCGGCTTGAGAG TGTTAGTTATAAGGATTATCAGGAAAAATCTTGGTTACCCTACTTTAACCTTGAAATCGCTCCTGGAAAGAAAATTGCAT TAATAAATCATGATGTTCGTATTAACAAACTATTTGCCGATCTTGTTTGTGGTTTCGAGCAGCCATCAACCGGCAGAATT TTGCTGGATGATAAAGATATTAGTCGGATAAGCCATGCTGAATTATGTGGCAATATCGCCTGGATTACTCCAGATGAAGA TCTTTTAACTGACACAATTGCAGCAAATATTGCCTACGGCAGTTTACGTTGCAGTAAGGAGATAGCGATTACTACAGCAG CACATGCTAGTCAGGCAATGGAATTTATCTGTAAGCTGCCACATGGTCTGCAAACGAAGCTCAAGAGATGTAACGATGTG CTTTCCGATGACCAGCGCCAGCGTATTCTTATTGCCCGAGCGCTATTAAAGGATCCCGGTATTATTATTCTGGATGAAAG TATTGCCTGTTTCGATACTGATAATCCTTTCTTGATGCGCGCGCTGTGCGTATTACTTAGTAATCGCACAGTTCTGATTC TTTCGGCGCGCCCTGCAATACTTGATCTTGCTGATCAGCTGTTAGATCTTGGGAACCTGGATGCATTATCTATGATTAGC CAGACTTCAGTCAGATAA
Upstream 100 bases:
>100_bases ATATCTTCTGATGTTTTGTATCGTTAGGTTACTATCAGTATCCTCGTGATTTGATGTAGTTTTACTTGTTACACTGATTC CCTCATCTTACCCCCTTGCA
Downstream 100 bases:
>100_bases TATCTATTTTTGATGATGTTGCGTTAAGGTAAACATGTCACTGATATAACGAACAGCATAACTATGATTATATTGGCAAC GTTAGGGGTATTTTGAATGA
Product: ABC transporter-related protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 565; Mature: 564
Protein sequence:
>565_residues MPDKRLVIQIELLKRFLTWNGSHWTSFIIIIVVGGLAAISASLIPLIAGQLFTQILPGGNRQLLQSLPLILVVLLLVIVI ASWSGYYVIHRLLDGLILDIRVEIFKKLLILPPACSDLPANTISLYFFKSIEKLYRNAISLGICLYRDSLIVVGLFSIMI WLNPDISFLILTVLAAALLIRQIFYANTYQRSMLDQEQHEVSRVISKTLRHSRVIFLDKGYKQEVERIRNMFRQLQLTLL RQIYQTGLLELLASIFLAGILTGILYYFLQQLVLSQLTVEDAVAFFTAGLMLVFPLKRLSHINLLLQQCNEALHVIFSLL DQNSEMVVENTLAVRVERAKGKLRLESVSYKDYQEKSWLPYFNLEIAPGKKIALINHDVRINKLFADLVCGFEQPSTGRI LLDDKDISRISHAELCGNIAWITPDEDLLTDTIAANIAYGSLRCSKEIAITTAAHASQAMEFICKLPHGLQTKLKRCNDV LSDDQRQRILIARALLKDPGIIILDESIACFDTDNPFLMRALCVLLSNRTVLILSARPAILDLADQLLDLGNLDALSMIS QTSVR
Sequences:
>Translated_565_residues MPDKRLVIQIELLKRFLTWNGSHWTSFIIIIVVGGLAAISASLIPLIAGQLFTQILPGGNRQLLQSLPLILVVLLLVIVI ASWSGYYVIHRLLDGLILDIRVEIFKKLLILPPACSDLPANTISLYFFKSIEKLYRNAISLGICLYRDSLIVVGLFSIMI WLNPDISFLILTVLAAALLIRQIFYANTYQRSMLDQEQHEVSRVISKTLRHSRVIFLDKGYKQEVERIRNMFRQLQLTLL RQIYQTGLLELLASIFLAGILTGILYYFLQQLVLSQLTVEDAVAFFTAGLMLVFPLKRLSHINLLLQQCNEALHVIFSLL DQNSEMVVENTLAVRVERAKGKLRLESVSYKDYQEKSWLPYFNLEIAPGKKIALINHDVRINKLFADLVCGFEQPSTGRI LLDDKDISRISHAELCGNIAWITPDEDLLTDTIAANIAYGSLRCSKEIAITTAAHASQAMEFICKLPHGLQTKLKRCNDV LSDDQRQRILIARALLKDPGIIILDESIACFDTDNPFLMRALCVLLSNRTVLILSARPAILDLADQLLDLGNLDALSMIS QTSVR >Mature_564_residues PDKRLVIQIELLKRFLTWNGSHWTSFIIIIVVGGLAAISASLIPLIAGQLFTQILPGGNRQLLQSLPLILVVLLLVIVIA SWSGYYVIHRLLDGLILDIRVEIFKKLLILPPACSDLPANTISLYFFKSIEKLYRNAISLGICLYRDSLIVVGLFSIMIW LNPDISFLILTVLAAALLIRQIFYANTYQRSMLDQEQHEVSRVISKTLRHSRVIFLDKGYKQEVERIRNMFRQLQLTLLR QIYQTGLLELLASIFLAGILTGILYYFLQQLVLSQLTVEDAVAFFTAGLMLVFPLKRLSHINLLLQQCNEALHVIFSLLD QNSEMVVENTLAVRVERAKGKLRLESVSYKDYQEKSWLPYFNLEIAPGKKIALINHDVRINKLFADLVCGFEQPSTGRIL LDDKDISRISHAELCGNIAWITPDEDLLTDTIAANIAYGSLRCSKEIAITTAAHASQAMEFICKLPHGLQTKLKRCNDVL SDDQRQRILIARALLKDPGIIILDESIACFDTDNPFLMRALCVLLSNRTVLILSARPAILDLADQLLDLGNLDALSMISQ TSVR
Specific function: Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation [H]
COG id: COG1132
COG function: function code V; ABC-type multidrug transport system, ATPase and permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9955963, Length=412, Percent_Identity=27.1844660194175, Blast_Score=122, Evalue=7e-28, Organism=Homo sapiens, GI73747915, Length=422, Percent_Identity=25.1184834123223, Blast_Score=116, Evalue=6e-26, Organism=Homo sapiens, GI9955966, Length=409, Percent_Identity=24.2053789731051, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI45243524, Length=409, Percent_Identity=24.2053789731051, Blast_Score=115, Evalue=1e-25, Organism=Homo sapiens, GI73747917, Length=371, Percent_Identity=25.3369272237197, Blast_Score=113, Evalue=6e-25, Organism=Homo sapiens, GI156105685, Length=426, Percent_Identity=25.5868544600939, Blast_Score=110, Evalue=4e-24, Organism=Homo sapiens, GI171184400, Length=419, Percent_Identity=25.0596658711217, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI42741659, Length=347, Percent_Identity=25.9365994236311, Blast_Score=103, Evalue=4e-22, Organism=Homo sapiens, GI9961250, Length=284, Percent_Identity=27.4647887323944, Blast_Score=99, Evalue=8e-21, Organism=Homo sapiens, GI9961252, Length=284, Percent_Identity=27.4647887323944, Blast_Score=99, Evalue=8e-21, Organism=Homo sapiens, GI4505771, Length=284, Percent_Identity=27.4647887323944, Blast_Score=99, Evalue=9e-21, Organism=Homo sapiens, GI9955968, Length=242, Percent_Identity=28.9256198347107, Blast_Score=99, Evalue=1e-20, Organism=Homo sapiens, GI42490749, Length=338, Percent_Identity=24.2603550295858, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI21536378, Length=235, Percent_Identity=27.2340425531915, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI255708477, Length=243, Percent_Identity=27.1604938271605, Blast_Score=90, Evalue=4e-18, Organism=Homo sapiens, GI9665248, Length=184, Percent_Identity=29.3478260869565, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI148612844, Length=242, Percent_Identity=29.7520661157025, Blast_Score=79, Evalue=9e-15, Organism=Escherichia coli, GI1787143, Length=500, Percent_Identity=27, Blast_Score=166, Evalue=5e-42, Organism=Escherichia coli, GI1786654, Length=255, Percent_Identity=26.6666666666667, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1786653, Length=300, Percent_Identity=23.6666666666667, Blast_Score=67, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193208177, Length=322, Percent_Identity=28.5714285714286, Blast_Score=116, Evalue=4e-26, Organism=Caenorhabditis elegans, GI115533592, Length=557, Percent_Identity=24.7755834829443, Blast_Score=110, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17565938, Length=222, Percent_Identity=31.5315315315315, Blast_Score=108, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17543740, Length=216, Percent_Identity=30.5555555555556, Blast_Score=102, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17533971, Length=556, Percent_Identity=21.7625899280576, Blast_Score=102, Evalue=6e-22, Organism=Caenorhabditis elegans, GI71992290, Length=553, Percent_Identity=21.3381555153707, Blast_Score=98, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17567265, Length=244, Percent_Identity=25.8196721311475, Blast_Score=98, Evalue=1e-20, Organism=Caenorhabditis elegans, GI193202349, Length=398, Percent_Identity=24.8743718592965, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71984940, Length=222, Percent_Identity=30.6306306306306, Blast_Score=96, Evalue=5e-20, Organism=Caenorhabditis elegans, GI71996550, Length=404, Percent_Identity=23.2673267326733, Blast_Score=95, Evalue=9e-20, Organism=Caenorhabditis elegans, GI193209708, Length=395, Percent_Identity=22.7848101265823, Blast_Score=95, Evalue=1e-19, Organism=Caenorhabditis elegans, GI115535101, Length=241, Percent_Identity=27.3858921161826, Blast_Score=95, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17511077, Length=562, Percent_Identity=21.1743772241993, Blast_Score=94, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17567269, Length=236, Percent_Identity=25, Blast_Score=91, Evalue=1e-18, Organism=Caenorhabditis elegans, GI115534520, Length=294, Percent_Identity=26.530612244898, Blast_Score=91, Evalue=1e-18, Organism=Caenorhabditis elegans, GI25146777, Length=427, Percent_Identity=22.7166276346604, Blast_Score=89, Evalue=9e-18, Organism=Caenorhabditis elegans, GI71992285, Length=358, Percent_Identity=24.5810055865922, Blast_Score=88, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17569145, Length=252, Percent_Identity=26.5873015873016, Blast_Score=88, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17569143, Length=240, Percent_Identity=27.9166666666667, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71996809, Length=227, Percent_Identity=25.9911894273128, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI193211017, Length=216, Percent_Identity=26.8518518518519, Blast_Score=87, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193211015, Length=216, Percent_Identity=26.8518518518519, Blast_Score=87, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17541710, Length=385, Percent_Identity=23.1168831168831, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17558664, Length=232, Percent_Identity=27.1551724137931, Blast_Score=86, Evalue=7e-17, Organism=Caenorhabditis elegans, GI212646699, Length=216, Percent_Identity=24.0740740740741, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI32566680, Length=234, Percent_Identity=25.6410256410256, Blast_Score=66, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=378, Percent_Identity=26.984126984127, Blast_Score=104, Evalue=4e-23, Organism=Saccharomyces cerevisiae, GI6323959, Length=299, Percent_Identity=27.0903010033445, Blast_Score=88, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6322640, Length=318, Percent_Identity=24.5283018867925, Blast_Score=73, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323217, Length=374, Percent_Identity=24.5989304812834, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI24641565, Length=302, Percent_Identity=31.1258278145695, Blast_Score=115, Evalue=7e-26, Organism=Drosophila melanogaster, GI21357907, Length=407, Percent_Identity=26.2899262899263, Blast_Score=105, Evalue=6e-23, Organism=Drosophila melanogaster, GI17136662, Length=270, Percent_Identity=28.8888888888889, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI281363262, Length=373, Percent_Identity=23.0563002680965, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI24653245, Length=373, Percent_Identity=23.0563002680965, Blast_Score=97, Evalue=3e-20, Organism=Drosophila melanogaster, GI23397593, Length=293, Percent_Identity=26.6211604095563, Blast_Score=96, Evalue=7e-20, Organism=Drosophila melanogaster, GI85726357, Length=322, Percent_Identity=25.776397515528, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI21357851, Length=364, Percent_Identity=23.0769230769231, Blast_Score=93, Evalue=4e-19, Organism=Drosophila melanogaster, GI45551502, Length=364, Percent_Identity=23.0769230769231, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI45551501, Length=364, Percent_Identity=23.0769230769231, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI24659289, Length=568, Percent_Identity=22.0070422535211, Blast_Score=86, Evalue=9e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR017940 - InterPro: IPR011917 - InterPro: IPR001140 - InterPro: IPR011527 - InterPro: IPR003593 [H]
Pfam domain/function: PF00664 ABC_membrane; PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 63708; Mature: 63577
Theoretical pI: Translated: 8.09; Mature: 8.09
Prosite motif: PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDKRLVIQIELLKRFLTWNGSHWTSFIIIIVVGGLAAISASLIPLIAGQLFTQILPGGN CCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC RQLLQSLPLILVVLLLVIVIASWSGYYVIHRLLDGLILDIRVEIFKKLLILPPACSDLPA HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC NTISLYFFKSIEKLYRNAISLGICLYRDSLIVVGLFSIMIWLNPDISFLILTVLAAALLI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RQIFYANTYQRSMLDQEQHEVSRVISKTLRHSRVIFLDKGYKQEVERIRNMFRQLQLTLL HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHH RQIYQTGLLELLASIFLAGILTGILYYFLQQLVLSQLTVEDAVAFFTAGLMLVFPLKRLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HINLLLQQCNEALHVIFSLLDQNSEMVVENTLAVRVERAKGKLRLESVSYKDYQEKSWLP HHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHEEEECCCCCEEEEECCCCCCCCCCCCC YFNLEIAPGKKIALINHDVRINKLFADLVCGFEQPSTGRILLDDKDISRISHAELCGNIA EEEEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCEE WITPDEDLLTDTIAANIAYGSLRCSKEIAITTAAHASQAMEFICKLPHGLQTKLKRCNDV EECCCHHHHHHHHHHHHHHCCCEECCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHH LSDDQRQRILIARALLKDPGIIILDESIACFDTDNPFLMRALCVLLSNRTVLILSARPAI HCCCHHHHHHHHHHHHCCCCEEEECCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCCHH LDLADQLLDLGNLDALSMISQTSVR HHHHHHHHCCCCCHHHHHHHHHCCC >Mature Secondary Structure PDKRLVIQIELLKRFLTWNGSHWTSFIIIIVVGGLAAISASLIPLIAGQLFTQILPGGN CCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC RQLLQSLPLILVVLLLVIVIASWSGYYVIHRLLDGLILDIRVEIFKKLLILPPACSDLPA HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC NTISLYFFKSIEKLYRNAISLGICLYRDSLIVVGLFSIMIWLNPDISFLILTVLAAALLI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RQIFYANTYQRSMLDQEQHEVSRVISKTLRHSRVIFLDKGYKQEVERIRNMFRQLQLTLL HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHH RQIYQTGLLELLASIFLAGILTGILYYFLQQLVLSQLTVEDAVAFFTAGLMLVFPLKRLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HINLLLQQCNEALHVIFSLLDQNSEMVVENTLAVRVERAKGKLRLESVSYKDYQEKSWLP HHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHEEEECCCCCEEEEECCCCCCCCCCCCC YFNLEIAPGKKIALINHDVRINKLFADLVCGFEQPSTGRILLDDKDISRISHAELCGNIA EEEEEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCEE WITPDEDLLTDTIAANIAYGSLRCSKEIAITTAAHASQAMEFICKLPHGLQTKLKRCNDV EECCCHHHHHHHHHHHHHHCCCEECCCEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHH LSDDQRQRILIARALLKDPGIIILDESIACFDTDNPFLMRALCVLLSNRTVLILSARPAI HCCCHHHHHHHHHHHHCCCCEEEECCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCCHH LDLADQLLDLGNLDALSMISQTSVR HHHHHHHHCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA