Click here to switch to the map view.

The map label for this gene is fliR [H]

Identifier: 114332027

GI number: 114332027

Start: 2176966

End: 2177766

Strand: Direct

Name: fliR [H]

Synonym: Neut_2061

Alternate gene names: 114332027

Gene position: 2176966-2177766 (Clockwise)

Preceding gene: 114332026

Following gene: 114332028

Centisome position: 81.81

GC content: 51.19

Gene sequence:

>801_bases
ATGTTCAGCATCACCACCGAGCAACTGAACGGCTGGCTGATTATCCTGATCTGGCCACTGGCCAGAATTCTCGCACTCAT
GACTGCCACCCCACTGCTAGGCAGTAGCAGTATCCCAATCCAGGTCAAACTGGGGCTGGCTGTACTACTGACTATTCTGA
TTGCCCCTCTGCTGCCCCCGCTACCTCAGATTGACCCAGGCTCCGGCGTGGGTCCCATTGTCTTGCTGCAACAGATTATT
ATCGGGCTGGCGATGGGTTTCTCCATACGCATTGTTTTTACTGCAGTAGAAATGGCGGGAGAAATTACGGGGTTGCAGAT
GGGGCTCGGTTTTGCAACTTTCTTTGATCCGCAGCAATCCGGCCAGGTTCAGCTGGTCGGCCGTTTCTACGGACTACTTG
CTACACTCTTGTTTCTGGCCATCGATGGGCATTTGCAGGTTATTGCTGTGCTCGCACAGAGTTTCACCATCTTGCCAATC
GGTGCAGATGGGATGAATGTTACTTCATTCACAACTCTTGTTAACTGGGGCGCTGAAATTTTCACATTGGGATTACATCT
GGCCCTGCCAGTTCTGGCAGCTTTGCTGATCACCAATCTTGCACTGGGCATCCTGACACGCGCTGCGCCGCAATTGAATA
TTTTTGCAGTTGGATTTCCATTGACGCTGGGAATCGGCCTGCTGGTCATGTCATGGGCCTTGCCTTATTTTACTCCTGTG
CTTACGCAAATGTTTCAGGAAAGCTTTTCCATCATGCGTTCACTCGCCGGTGGAAGTGTCAATGTAACCGGCATACCATA
A

Upstream 100 bases:

>100_bases
ATAGGCCGTTACAAATACACGGAACGGCAGCTCTCTGGTCACGTTTCTTCACAGCCTGAGAAATCACCTTTAACAGCGTT
CAAAAACAGGTTATCGATCC

Downstream 100 bases:

>100_bases
ACCCGGTTCCGGAAAGCTATTTACGCTATGGCTTATCTGTGGCGCTCACATTCTTTTAATTAACCAGGCTTTTCACCCCC
TTTTTAGCCGATTGCCATGC

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MFSITTEQLNGWLIILIWPLARILALMTATPLLGSSSIPIQVKLGLAVLLTILIAPLLPPLPQIDPGSGVGPIVLLQQII
IGLAMGFSIRIVFTAVEMAGEITGLQMGLGFATFFDPQQSGQVQLVGRFYGLLATLLFLAIDGHLQVIAVLAQSFTILPI
GADGMNVTSFTTLVNWGAEIFTLGLHLALPVLAALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPV
LTQMFQESFSIMRSLAGGSVNVTGIP

Sequences:

>Translated_266_residues
MFSITTEQLNGWLIILIWPLARILALMTATPLLGSSSIPIQVKLGLAVLLTILIAPLLPPLPQIDPGSGVGPIVLLQQII
IGLAMGFSIRIVFTAVEMAGEITGLQMGLGFATFFDPQQSGQVQLVGRFYGLLATLLFLAIDGHLQVIAVLAQSFTILPI
GADGMNVTSFTTLVNWGAEIFTLGLHLALPVLAALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPV
LTQMFQESFSIMRSLAGGSVNVTGIP
>Mature_266_residues
MFSITTEQLNGWLIILIWPLARILALMTATPLLGSSSIPIQVKLGLAVLLTILIAPLLPPLPQIDPGSGVGPIVLLQQII
IGLAMGFSIRIVFTAVEMAGEITGLQMGLGFATFFDPQQSGQVQLVGRFYGLLATLLFLAIDGHLQVIAVLAQSFTILPI
GADGMNVTSFTTLVNWGAEIFTLGLHLALPVLAALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPV
LTQMFQESFSIMRSLAGGSVNVTGIP

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=255, Percent_Identity=44.7058823529412, Blast_Score=180, Evalue=8e-47,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28157; Mature: 28157

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSITTEQLNGWLIILIWPLARILALMTATPLLGSSSIPIQVKLGLAVLLTILIAPLLPP
CCCCCHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCC
LPQIDPGSGVGPIVLLQQIIIGLAMGFSIRIVFTAVEMAGEITGLQMGLGFATFFDPQQS
CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCC
GQVQLVGRFYGLLATLLFLAIDGHLQVIAVLAQSFTILPIGADGMNVTSFTTLVNWGAEI
CCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCHHH
FTLGLHLALPVLAALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
LTQMFQESFSIMRSLAGGSVNVTGIP
HHHHHHHHHHHHHHHCCCCEEEECCC
>Mature Secondary Structure
MFSITTEQLNGWLIILIWPLARILALMTATPLLGSSSIPIQVKLGLAVLLTILIAPLLPP
CCCCCHHHCCCEEEEHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCC
LPQIDPGSGVGPIVLLQQIIIGLAMGFSIRIVFTAVEMAGEITGLQMGLGFATFFDPQQS
CCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCC
GQVQLVGRFYGLLATLLFLAIDGHLQVIAVLAQSFTILPIGADGMNVTSFTTLVNWGAEI
CCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCHHH
FTLGLHLALPVLAALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHH
LTQMFQESFSIMRSLAGGSVNVTGIP
HHHHHHHHHHHHHHHCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]