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The map label for this gene is yciO [H]

Identifier: 114332006

GI number: 114332006

Start: 2156990

End: 2157622

Strand: Direct

Name: yciO [H]

Synonym: Neut_2040

Alternate gene names: 114332006

Gene position: 2156990-2157622 (Clockwise)

Preceding gene: 114332005

Following gene: 114332007

Centisome position: 81.06

GC content: 50.08

Gene sequence:

>633_bases
ATGGCTCAATTTTTTTCCATACACCCACAAACACCTCACTTAAGACTTATCCGCCAGGCAGCTGATATCGTTCGCGAAGG
CGGCATAATTGTTTATCCGACCGATTCCTGTTATGCACTGGGTTGCCAGATCGGCAACAAGGAGGCAATGGATCGTATAC
GCACCATCCGAAAAGTGGGTCAGGATCATAATTTCACACTGGTGTGCCGGGATCTGGCGGAAATAGCAACGTATGCCAAA
GTAGATAATGCGCAATATCGTCTGCTTAAAGCTACCACACCCGGCAGTTATACTTTTATTCTGACTGCGAGCCGCGAAGT
CCCGCGCCGGCTTCAACATCCCAAGCGACATACAATCGGGCTACGCATCCCTGAGCACCCTGTCACACAGGCATTATTAG
CCGAATTAAATGAACCTCTGCTGAGTTCAACACTTATCCTCCCAGAGGACGAGCTGCCACTAAATGATGCCGAAGAAATA
CGCCAGCGCCTGGAACATCAGGTCGAGTTAATCATGGATGCCGGCTCATGTGGCACCAACATGACTACGGTAATTGACCT
GACGGAAGCAACCCCGAGAATCGCCCGCCTTGGAAAAGGAGATCTCTCACCCTTCGGAATCACAAATGGATGA

Upstream 100 bases:

>100_bases
AAGCCGGATAAACCAGATTATTATTCTCTGGAAAATTATCCTATTTCACTCGATCATGAAGCTGCTGTAATTTCCTTATA
TAACCGCTTAAAAAATAGCC

Downstream 100 bases:

>100_bases
CATCATTCAAGGTATCGCTATTTACGCACTGCCTGTTATTTTTGCCATCACATTGCATGAGGCCGCCCACGGCTACGTTG
CCCGGCATTTTGGTGATCTG

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MAQFFSIHPQTPHLRLIRQAADIVREGGIIVYPTDSCYALGCQIGNKEAMDRIRTIRKVGQDHNFTLVCRDLAEIATYAK
VDNAQYRLLKATTPGSYTFILTASREVPRRLQHPKRHTIGLRIPEHPVTQALLAELNEPLLSSTLILPEDELPLNDAEEI
RQRLEHQVELIMDAGSCGTNMTTVIDLTEATPRIARLGKGDLSPFGITNG

Sequences:

>Translated_210_residues
MAQFFSIHPQTPHLRLIRQAADIVREGGIIVYPTDSCYALGCQIGNKEAMDRIRTIRKVGQDHNFTLVCRDLAEIATYAK
VDNAQYRLLKATTPGSYTFILTASREVPRRLQHPKRHTIGLRIPEHPVTQALLAELNEPLLSSTLILPEDELPLNDAEEI
RQRLEHQVELIMDAGSCGTNMTTVIDLTEATPRIARLGKGDLSPFGITNG
>Mature_209_residues
AQFFSIHPQTPHLRLIRQAADIVREGGIIVYPTDSCYALGCQIGNKEAMDRIRTIRKVGQDHNFTLVCRDLAEIATYAKV
DNAQYRLLKATTPGSYTFILTASREVPRRLQHPKRHTIGLRIPEHPVTQALLAELNEPLLSSTLILPEDELPLNDAEEIR
QRLEHQVELIMDAGSCGTNMTTVIDLTEATPRIARLGKGDLSPFGITNG

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=58.0487804878049, Blast_Score=253, Evalue=6e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23419; Mature: 23288

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQFFSIHPQTPHLRLIRQAADIVREGGIIVYPTDSCYALGCQIGNKEAMDRIRTIRKVG
CCCEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHC
QDHNFTLVCRDLAEIATYAKVDNAQYRLLKATTPGSYTFILTASREVPRRLQHPKRHTIG
CCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCHHHHHHHCCCCCCEEE
LRIPEHPVTQALLAELNEPLLSSTLILPEDELPLNDAEEIRQRLEHQVELIMDAGSCGTN
EECCCCHHHHHHHHHHCCHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCC
MTTVIDLTEATPRIARLGKGDLSPFGITNG
CEEEEEECCCCHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
AQFFSIHPQTPHLRLIRQAADIVREGGIIVYPTDSCYALGCQIGNKEAMDRIRTIRKVG
CCEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHC
QDHNFTLVCRDLAEIATYAKVDNAQYRLLKATTPGSYTFILTASREVPRRLQHPKRHTIG
CCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCHHHHHHHCCCCCCEEE
LRIPEHPVTQALLAELNEPLLSSTLILPEDELPLNDAEEIRQRLEHQVELIMDAGSCGTN
EECCCCHHHHHHHHHHCCHHHHCEEECCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCC
MTTVIDLTEATPRIARLGKGDLSPFGITNG
CEEEEEECCCCHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]