Click here to switch to the map view.

The map label for this gene is rfbD [C]

Identifier: 114331963

GI number: 114331963

Start: 2111549

End: 2111830

Strand: Reverse

Name: rfbD [C]

Synonym: Neut_1997

Alternate gene names: 114331963

Gene position: 2111830-2111549 (Counterclockwise)

Preceding gene: 114331967

Following gene: 114331962

Centisome position: 79.36

GC content: 51.77

Gene sequence:

>282_bases
ATGAAGATCTTGCTATTAGGCCAATCCGGTCAGGTGGGCTGGGAGTTGCAGCGTAGCTTGGCTGTGCTGGGGCAGGTGGT
AGCGCTGGGGCGTGATAATCATGAGTATTGCGGGAATGTTAGTGATCCCGGAGGGGGCGGCTACAGTGCACGCATTCCTT
TCATCTCTGGGTTGACCTTTACCCCTGGGTGTTCTGCGACTGAAGCGCCAAAAGACGTCAAAAGCTTTATTTTTTGTGCT
AAACAGACTGGGGTGGCGTCATCTTTCGATCAATTATCATAG

Upstream 100 bases:

>100_bases
TAAATATCTTCTGGCGCATAGCAGTTGTTTTGATTTTCTCAACTTTTTAAGGGCTTTGGGCTTCCAGTCTTTTGCGAAGG
TAAAAATAAAAAGAGTACAC

Downstream 100 bases:

>100_bases
CAGTTGACAACGGAGCTGGCTTTCAATAAATTGAAAGTTCATGGAAAAGAGAATTTACTTTTCTTGTGTCTCTCACCCGT
CCGGGCTCTTAAAGTAGTTC

Product: hypothetical protein

Products: dTDP-L-rhamnose; Nicotinamide adenine dinucleotide phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 93; Mature: 93

Protein sequence:

>93_residues
MKILLLGQSGQVGWELQRSLAVLGQVVALGRDNHEYCGNVSDPGGGGYSARIPFISGLTFTPGCSATEAPKDVKSFIFCA
KQTGVASSFDQLS

Sequences:

>Translated_93_residues
MKILLLGQSGQVGWELQRSLAVLGQVVALGRDNHEYCGNVSDPGGGGYSARIPFISGLTFTPGCSATEAPKDVKSFIFCA
KQTGVASSFDQLS
>Mature_93_residues
MKILLLGQSGQVGWELQRSLAVLGQVVALGRDNHEYCGNVSDPGGGGYSARIPFISGLTFTPGCSATEAPKDVKSFIFCA
KQTGVASSFDQLS

Specific function: DTDP-L-RHAMNOSE BIOSYNTHESIS WITHIN THE O ANTIGEN BIOSYNTHESIS PATHWAY OF LIPOPOLYSACCHARIDE BIOSYNTHESIS. [C]

COG id: COG1091

COG function: function code M; dTDP-4-dehydrorhamnose reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.1.1.133 [C]

Molecular weight: Translated: 9738; Mature: 9738

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILLLGQSGQVGWELQRSLAVLGQVVALGRDNHEYCGNVSDPGGGGYSARIPFISGLTF
CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEECCEECCCEE
TPGCSATEAPKDVKSFIFCAKQTGVASSFDQLS
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKILLLGQSGQVGWELQRSLAVLGQVVALGRDNHEYCGNVSDPGGGGYSARIPFISGLTF
CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCEEECCEECCCEE
TPGCSATEAPKDVKSFIFCAKQTGVASSFDQLS
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NADPH [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: dTDP-4-dehydro-6-deoxy-L-mannose; H+; Nicotinamide adenine dinucleotide phosphate - reduced [C]

Specific reaction: dTDP-4-dehydro-6-deoxy-L-mannose + H+ + Nicotinamide adenine dinucleotide phosphate - reduced --> dTDP-L-rhamnose + Nicotinamide adenine dinucleotide phosphate [C]

General reaction: Redox reaction [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA