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The map label for this gene is ybeY [C]

Identifier: 114331764

GI number: 114331764

Start: 1891641

End: 1892066

Strand: Reverse

Name: ybeY [C]

Synonym: Neut_1787

Alternate gene names: 114331764

Gene position: 1892066-1891641 (Counterclockwise)

Preceding gene: 114331765

Following gene: 114331763

Centisome position: 71.1

GC content: 44.6

Gene sequence:

>426_bases
TTGACGGTGCAGTTTGCGGCAGATAAAACTAATATTCCGGGCAGGCAACTGTTTCGTAAATGGGTCGGGGCTGCGTTAAA
TAAGCCGGCTGAAATTGTTATTCGTATCGTTGGTATGCAGGAAGGTGAAGTGCTTAATCGCAAGTTTCGTGGCAAGGACT
CTGCAACTAACGTATTGACGTTTGTGTATAGTGATGATGTTCCACTTCTCGGTGATATCGTGCTGTGCGCTCCTGTAATT
TCCAGGGAGGCAGAACAACAAAATAAAGATCTGGTAGCACACTATGCGCATCTTATTGTCCATGGCGTTTTACATTTGCA
GGGATATGATCATATCAGCGACGAAGATGCCGTTGTTATGGAATCCCTCGAAACAAAGATTATCACCAGGCTCAATTATC
CTGACCCTTATGTCATTCAGCAGTGA

Upstream 100 bases:

>100_bases
GTTCGGCATCCACTGGTTCAACGTATAGTGGATGCCTACGAAAAATATGCCTCTGATAAAGAACCCCAATAAATTTTCTG
GTTGTGGGAAGACGTTTAAA

Downstream 100 bases:

>100_bases
AATGATATAAACGGACCAGACAAATCTTTTTTATTCCCGATGCTATACATTTCATGAACGAGACCTCCCCCAAAGCTGGT
TGGCTTGAGCATATCAGTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MTVQFAADKTNIPGRQLFRKWVGAALNKPAEIVIRIVGMQEGEVLNRKFRGKDSATNVLTFVYSDDVPLLGDIVLCAPVI
SREAEQQNKDLVAHYAHLIVHGVLHLQGYDHISDEDAVVMESLETKIITRLNYPDPYVIQQ

Sequences:

>Translated_141_residues
MTVQFAADKTNIPGRQLFRKWVGAALNKPAEIVIRIVGMQEGEVLNRKFRGKDSATNVLTFVYSDDVPLLGDIVLCAPVI
SREAEQQNKDLVAHYAHLIVHGVLHLQGYDHISDEDAVVMESLETKIITRLNYPDPYVIQQ
>Mature_140_residues
TVQFAADKTNIPGRQLFRKWVGAALNKPAEIVIRIVGMQEGEVLNRKFRGKDSATNVLTFVYSDDVPLLGDIVLCAPVIS
REAEQQNKDLVAHYAHLIVHGVLHLQGYDHISDEDAVVMESLETKIITRLNYPDPYVIQQ

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=151, Percent_Identity=43.046357615894, Blast_Score=119, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_NITEC (Q0AF61)

Other databases:

- EMBL:   CP000450
- RefSeq:   YP_747986.1
- ProteinModelPortal:   Q0AF61
- SMR:   Q0AF61
- STRING:   Q0AF61
- GeneID:   4272265
- GenomeReviews:   CP000450_GR
- KEGG:   net:Neut_1787
- NMPDR:   fig|335283.3.peg.1999
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   RWIRHAL
- PhylomeDB:   Q0AF61
- ProtClustDB:   CLSK586209
- BioCyc:   NEUT335283:NEUT_1787-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 15840; Mature: 15709

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVQFAADKTNIPGRQLFRKWVGAALNKPAEIVIRIVGMQEGEVLNRKFRGKDSATNVLT
CEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHEEEEECCCCCHHHHHHHCCCCCCCEEEE
FVYSDDVPLLGDIVLCAPVISREAEQQNKDLVAHYAHLIVHGVLHLQGYDHISDEDAVVM
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
ESLETKIITRLNYPDPYVIQQ
HHHHHHHHHHCCCCCCEEECC
>Mature Secondary Structure 
TVQFAADKTNIPGRQLFRKWVGAALNKPAEIVIRIVGMQEGEVLNRKFRGKDSATNVLT
EEEECCCCCCCCHHHHHHHHHHHHHCCCHHHEEEEECCCCCHHHHHHHCCCCCCCEEEE
FVYSDDVPLLGDIVLCAPVISREAEQQNKDLVAHYAHLIVHGVLHLQGYDHISDEDAVVM
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
ESLETKIITRLNYPDPYVIQQ
HHHHHHHHHHCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA