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The map label for this gene is 114331386

Identifier: 114331386

GI number: 114331386

Start: 1466393

End: 1466896

Strand: Direct

Name: 114331386

Synonym: Neut_1395

Alternate gene names: NA

Gene position: 1466393-1466896 (Clockwise)

Preceding gene: 114331385

Following gene: 114331387

Centisome position: 55.11

GC content: 48.81

Gene sequence:

>504_bases
GTGCAGGATGAACACACTGCACTGGATATCGTGCAGGACTCAATGATGAAGCTGACCGAGAAGTATGCGCATAAACCGCC
TGCCGAGCTCCCTCCCCTGTTTCAGCGCATTCTGCAAAATAAGATTCGTGATTATTATCGGCGACAGAAATCCCGTTCAC
TCTGGGTGACGTTGTTCTCAGCATTTATGCCTGCTTCAAGCGAAAAAGATACTGATGAATATTCCGATATTCCCGAATCT
CTGTCACTGGCGCAGGATTTCGACCAGAAAAACAATCCCGGTACCGCAGCGGAGCAATCTCAACTGATCGAACTGATCAG
CAAGGCGCTAGAAACTTTACCGCCACGTCAACGAGAGGCCTTCCTGTTGCGTTACTGGGAAGAGATGGATGTATCCGAAA
CAGCAAAAATCATGGATTGCTCGGAAGGAAGCGTAAAGACACATTGCTCCCGTGCGACACACACACTTGCCGCTATATTA
GAGGGTAAAGGAGTCAAGCGATGA

Upstream 100 bases:

>100_bases
ATCATAAACTCCAAGGCAGGTTATTCTGGCTACTCGGCAAGAACTTTCTGATTTTCTGAGCGAAGTCGAGCTGCGTGCAT
ACAAGCAAGCGTTATTCGCG

Downstream 100 bases:

>100_bases
ATAAAGAGGAAAAAACGGGGAGAACGATCGCAAGATTGCTGGATCACAGCTTGCGTGACATTACCCCAGGTACTCTGTAC
CAACTGCGAGCTGCACGCAG

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Transcription Regulator Protein; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase ECF Sigma Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MQDEHTALDIVQDSMMKLTEKYAHKPPAELPPLFQRILQNKIRDYYRRQKSRSLWVTLFSAFMPASSEKDTDEYSDIPES
LSLAQDFDQKNNPGTAAEQSQLIELISKALETLPPRQREAFLLRYWEEMDVSETAKIMDCSEGSVKTHCSRATHTLAAIL
EGKGVKR

Sequences:

>Translated_167_residues
MQDEHTALDIVQDSMMKLTEKYAHKPPAELPPLFQRILQNKIRDYYRRQKSRSLWVTLFSAFMPASSEKDTDEYSDIPES
LSLAQDFDQKNNPGTAAEQSQLIELISKALETLPPRQREAFLLRYWEEMDVSETAKIMDCSEGSVKTHCSRATHTLAAIL
EGKGVKR
>Mature_167_residues
MQDEHTALDIVQDSMMKLTEKYAHKPPAELPPLFQRILQNKIRDYYRRQKSRSLWVTLFSAFMPASSEKDTDEYSDIPES
LSLAQDFDQKNNPGTAAEQSQLIELISKALETLPPRQREAFLLRYWEEMDVSETAKIMDCSEGSVKTHCSRATHTLAAIL
EGKGVKR

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19150; Mature: 19150

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDEHTALDIVQDSMMKLTEKYAHKPPAELPPLFQRILQNKIRDYYRRQKSRSLWVTLFS
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFMPASSEKDTDEYSDIPESLSLAQDFDQKNNPGTAAEQSQLIELISKALETLPPRQREA
HHCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
FLLRYWEEMDVSETAKIMDCSEGSVKTHCSRATHTLAAILEGKGVKR
HHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQDEHTALDIVQDSMMKLTEKYAHKPPAELPPLFQRILQNKIRDYYRRQKSRSLWVTLFS
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFMPASSEKDTDEYSDIPESLSLAQDFDQKNNPGTAAEQSQLIELISKALETLPPRQREA
HHCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
FLLRYWEEMDVSETAKIMDCSEGSVKTHCSRATHTLAAILEGKGVKR
HHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA