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The map label for this gene is yeaT [C]

Identifier: 114331364

GI number: 114331364

Start: 1441061

End: 1441936

Strand: Direct

Name: yeaT [C]

Synonym: Neut_1373

Alternate gene names: 114331364

Gene position: 1441061-1441936 (Clockwise)

Preceding gene: 114331363

Following gene: 114331365

Centisome position: 54.15

GC content: 48.86

Gene sequence:

>876_bases
ATGAAATTTTTGAATGACATGGCTCTGTTCGTAGAGGTTGTCAAGGCCAAGAGCTTTCGCGGTGCTGCCGATGCTATCGG
AATGCCAAACTCAACGCTATCGCGACGGATTAGTGCGCTGGAAAAGACGCTTGGATTGCGCCTTTTACATCGCACAACGC
GTAAGATAACGTTAACCGAGGCTGGTCAGATTTATTACGAGCGTTGTAAGCGTATCGTCGATGAAGCCAAACTCGCACAA
GAGCAACTCAGCGAAATGCTCACACAGCCCAGTGGCGTGCTACGTGCTTCACTGCCCGTGGATTTTACCGTGACCTACAT
GGCACCCTTGATCGCCGAATTTGCAAAACTTTATCCGGGCATCGTCTTTGATTTCGATCTCACGTCACGGTGGGTCGATC
TGGTGAATGAACCTTTCGATGTGGCAATCCGTATAGGAAAACCAGAAAATTCCCAATTGATCGCACGTCCATTGGCCGTG
CTCCCTACATATCTTTATGCTTCACCTCGATATCTTGATCGCTCGGGAGAACCTGCCAAACCCGCTGATCTGGCAAACCA
TGAATGTCTGGGCATCATGAAGGCTGACACATGGACACTGCACAATGGGACAAACACTACCAAAATCTCTATTGGCAGCC
GATTTACGCTTAACAGTGTCGGAATGATTTGTCGCTTAGCAACACTTGATATGGGCATCATCATGATGATGGAGAAAATT
GTTGCTGATGATATTGCCAGTGGGCGATTGCGTCGCGTACTACCTCAATGGCGCGGGGCTCCGGTATCTGCCTGTGCTAT
TACGGCAACCCGATTACTGCCTGCAAAAACACAGCACTTCATTAAGTTCTTACAGGAGCATCTGGGCAAGGTTTAG

Upstream 100 bases:

>100_bases
TCATGATGATTTCCACAAGAGAGTGGGATTGTCCATTGTTTCTTATATAGAACAAAGACTATTTTTTGGATAACATTGCT
TCATTAATGGAGCATTAGAT

Downstream 100 bases:

>100_bases
CAGAATGAACCGCCCCGGGTTTTGAGGAGGCTCCACTATCTGAGAAGATGGAGCCATGAACAAATCAAATAAATATTCCC
CCGAAGTAAGAGCGCGCGCA

Product: transcriptional regulator, LysR family protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKFLNDMALFVEVVKAKSFRGAADAIGMPNSTLSRRISALEKTLGLRLLHRTTRKITLTEAGQIYYERCKRIVDEAKLAQ
EQLSEMLTQPSGVLRASLPVDFTVTYMAPLIAEFAKLYPGIVFDFDLTSRWVDLVNEPFDVAIRIGKPENSQLIARPLAV
LPTYLYASPRYLDRSGEPAKPADLANHECLGIMKADTWTLHNGTNTTKISIGSRFTLNSVGMICRLATLDMGIIMMMEKI
VADDIASGRLRRVLPQWRGAPVSACAITATRLLPAKTQHFIKFLQEHLGKV

Sequences:

>Translated_291_residues
MKFLNDMALFVEVVKAKSFRGAADAIGMPNSTLSRRISALEKTLGLRLLHRTTRKITLTEAGQIYYERCKRIVDEAKLAQ
EQLSEMLTQPSGVLRASLPVDFTVTYMAPLIAEFAKLYPGIVFDFDLTSRWVDLVNEPFDVAIRIGKPENSQLIARPLAV
LPTYLYASPRYLDRSGEPAKPADLANHECLGIMKADTWTLHNGTNTTKISIGSRFTLNSVGMICRLATLDMGIIMMMEKI
VADDIASGRLRRVLPQWRGAPVSACAITATRLLPAKTQHFIKFLQEHLGKV
>Mature_291_residues
MKFLNDMALFVEVVKAKSFRGAADAIGMPNSTLSRRISALEKTLGLRLLHRTTRKITLTEAGQIYYERCKRIVDEAKLAQ
EQLSEMLTQPSGVLRASLPVDFTVTYMAPLIAEFAKLYPGIVFDFDLTSRWVDLVNEPFDVAIRIGKPENSQLIARPLAV
LPTYLYASPRYLDRSGEPAKPADLANHECLGIMKADTWTLHNGTNTTKISIGSRFTLNSVGMICRLATLDMGIIMMMEKI
VADDIASGRLRRVLPQWRGAPVSACAITATRLLPAKTQHFIKFLQEHLGKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=33.5593220338983, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI145693193, Length=282, Percent_Identity=32.6241134751773, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=33.7837837837838, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=32.4232081911263, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1789440, Length=256, Percent_Identity=30.859375, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787128, Length=258, Percent_Identity=28.2945736434109, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787589, Length=260, Percent_Identity=28.0769230769231, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1789173, Length=250, Percent_Identity=27.2, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786448, Length=248, Percent_Identity=26.6129032258064, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787601, Length=134, Percent_Identity=27.6119402985075, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI157672245, Length=152, Percent_Identity=28.9473684210526, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788706, Length=260, Percent_Identity=26.1538461538462, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788748, Length=130, Percent_Identity=35.3846153846154, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI145693105, Length=174, Percent_Identity=30.4597701149425, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32423; Mature: 32423

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFLNDMALFVEVVKAKSFRGAADAIGMPNSTLSRRISALEKTLGLRLLHRTTRKITLTE
CCHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEH
AGQIYYERCKRIVDEAKLAQEQLSEMLTQPSGVLRASLPVDFTVTYMAPLIAEFAKLYPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCC
IVFDFDLTSRWVDLVNEPFDVAIRIGKPENSQLIARPLAVLPTYLYASPRYLDRSGEPAK
EEEEECHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PADLANHECLGIMKADTWTLHNGTNTTKISIGSRFTLNSVGMICRLATLDMGIIMMMEKI
CCCCCCCCEEEEEECCEEEEECCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
VADDIASGRLRRVLPQWRGAPVSACAITATRLLPAKTQHFIKFLQEHLGKV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFLNDMALFVEVVKAKSFRGAADAIGMPNSTLSRRISALEKTLGLRLLHRTTRKITLTE
CCHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEH
AGQIYYERCKRIVDEAKLAQEQLSEMLTQPSGVLRASLPVDFTVTYMAPLIAEFAKLYPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCC
IVFDFDLTSRWVDLVNEPFDVAIRIGKPENSQLIARPLAVLPTYLYASPRYLDRSGEPAK
EEEEECHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PADLANHECLGIMKADTWTLHNGTNTTKISIGSRFTLNSVGMICRLATLDMGIIMMMEKI
CCCCCCCCEEEEEECCEEEEECCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
VADDIASGRLRRVLPQWRGAPVSACAITATRLLPAKTQHFIKFLQEHLGKV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]