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The map label for this gene is sspB [H]

Identifier: 114331112

GI number: 114331112

Start: 1154902

End: 1155330

Strand: Direct

Name: sspB [H]

Synonym: Neut_1114

Alternate gene names: 114331112

Gene position: 1154902-1155330 (Clockwise)

Preceding gene: 114331111

Following gene: 114331124

Centisome position: 43.4

GC content: 34.27

Gene sequence:

>429_bases
ATGAATAATGTCTCTTCAATCAAACCTTATTTAATACGTGCTGTCCATGAGTGGTGTATTAATAATGGATATTGCCCTTA
TATCTCAGCATTAGAAGATGGATGTTCTGGTATTCCGGCTGAGTTATTTAAGAATAAAGAAATTATACTTAATATAAGCA
GCCAGTCAGTGAATGACTTACAGATTGATAATGAAATAATTCAATTTATAACTCGGTTCAATGGAGTACCAAAAAAAATC
AGGATTATGATTGCAGCTGTATCTGCAATATTTGCGCGAGAATCAGGGCAAGGACTTACCTTTATTCCGGAGATTAATAC
GGGATGGACCGAGGGGAGTTACATAGATGATTCTATTTTACAGAAAGACCAAGCTTTATCCGTTGAAGGTAAACAACGAG
ATAAAGCGTTTTTAAAAATTGTAAAATAG

Upstream 100 bases:

>100_bases
TACCAAAGCAGGCTGCTGCGTTGCTAAAGTATGCTGAAAGGCTTTTTAGCAGACCGCTATTTATTGATGCATTGACTCCA
GCTGAAAAATTGATGCGTAA

Downstream 100 bases:

>100_bases
TTTTATTTTTTTATTTGCCGGCATAGCTCAGTTGGTAGAGCAGCTGATTTGTAATCAGAAGGTCGCGAGTTCGATTCTTG
CTGTCGGCACCATTAAATCA

Product: ClpXP protease specificity-enhancing factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MNNVSSIKPYLIRAVHEWCINNGYCPYISALEDGCSGIPAELFKNKEIILNISSQSVNDLQIDNEIIQFITRFNGVPKKI
RIMIAAVSAIFARESGQGLTFIPEINTGWTEGSYIDDSILQKDQALSVEGKQRDKAFLKIVK

Sequences:

>Translated_142_residues
MNNVSSIKPYLIRAVHEWCINNGYCPYISALEDGCSGIPAELFKNKEIILNISSQSVNDLQIDNEIIQFITRFNGVPKKI
RIMIAAVSAIFARESGQGLTFIPEINTGWTEGSYIDDSILQKDQALSVEGKQRDKAFLKIVK
>Mature_142_residues
MNNVSSIKPYLIRAVHEWCINNGYCPYISALEDGCSGIPAELFKNKEIILNISSQSVNDLQIDNEIIQFITRFNGVPKKI
RIMIAAVSAIFARESGQGLTFIPEINTGWTEGSYIDDSILQKDQALSVEGKQRDKAFLKIVK

Specific function: Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known [H]

COG id: COG2969

COG function: function code R; Stringent starvation protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789623, Length=133, Percent_Identity=30.8270676691729, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: 297 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007481 [H]

Pfam domain/function: PF04386 SspB [H]

EC number: NA

Molecular weight: Translated: 15880; Mature: 15880

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNVSSIKPYLIRAVHEWCINNGYCPYISALEDGCSGIPAELFKNKEIILNISSQSVNDL
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHCCCEEEEEECCCCCCHH
QIDNEIIQFITRFNGVPKKIRIMIAAVSAIFARESGQGLTFIPEINTGWTEGSYIDDSIL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHH
QKDQALSVEGKQRDKAFLKIVK
CCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MNNVSSIKPYLIRAVHEWCINNGYCPYISALEDGCSGIPAELFKNKEIILNISSQSVNDL
CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHHHCCCEEEEEECCCCCCHH
QIDNEIIQFITRFNGVPKKIRIMIAAVSAIFARESGQGLTFIPEINTGWTEGSYIDDSIL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHH
QKDQALSVEGKQRDKAFLKIVK
CCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]