Click here to switch to the map view.

The map label for this gene is insF1 [H]

Identifier: 114331066

GI number: 114331066

Start: 1101825

End: 1102190

Strand: Reverse

Name: insF1 [H]

Synonym: Neut_1068

Alternate gene names: 114331066

Gene position: 1102190-1101825 (Counterclockwise)

Preceding gene: 114331068

Following gene: 114331063

Centisome position: 41.42

GC content: 48.36

Gene sequence:

>366_bases
GTGTGGACAACCGGCATCACTTACATCCGGACAGCACAAGGATGGATATATTTGGCGGTTGTACTGGATCTCTACTCACG
GCGCATTGTGGGTTGGCATATGGAGTATTACATGACGACTGCTCTGGTAAATCGTGCACTGATGATGGCAATCAACCTGA
GACAACCACCAAAAAATCTGTTGCATCACTCCGACAGAGGTAGCCAGTATGCTTCACACGACTACCAAACGCTACTGACT
CAGCACAACATGCAATGTTCGATGAGCCGCAAAGGAAACTGTTGGGATACTCAGTTTAATATGGTATGGAATGCCCGGCT
TGATCTGACCCGTGTTGGGATTGGCGAAGTAGTGCCTTTGCGTTGA

Upstream 100 bases:

>100_bases
GTCGTGCGGGCGCTTCCGTGTAATATCTGTCCCATAAATCATCCCTCCGTAGCTGGTTATATGTTACACCGGCACACCGT
GGGACTAAACACCTAACCTG

Downstream 100 bases:

>100_bases
CCTGTCGATCTGGCCCAGGCATTCCCTGAGCGTTGCCGGGCCCAATACATGTGGCCTAATAGGAGCCTTGAATTGCACCG
TGAGTGTCCTGTCCGGTAAG

Product: putative transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MWTTGITYIRTAQGWIYLAVVLDLYSRRIVGWHMEYYMTTALVNRALMMAINLRQPPKNLLHHSDRGSQYASHDYQTLLT
QHNMQCSMSRKGNCWDTQFNMVWNARLDLTRVGIGEVVPLR

Sequences:

>Translated_121_residues
MWTTGITYIRTAQGWIYLAVVLDLYSRRIVGWHMEYYMTTALVNRALMMAINLRQPPKNLLHHSDRGSQYASHDYQTLLT
QHNMQCSMSRKGNCWDTQFNMVWNARLDLTRVGIGEVVPLR
>Mature_121_residues
MWTTGITYIRTAQGWIYLAVVLDLYSRRIVGWHMEYYMTTALVNRALMMAINLRQPPKNLLHHSDRGSQYASHDYQTLLT
QHNMQCSMSRKGNCWDTQFNMVWNARLDLTRVGIGEVVPLR

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=127, Percent_Identity=37.7952755905512, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI1788405, Length=95, Percent_Identity=52.6315789473684, Blast_Score=108, Evalue=1e-25,
Organism=Escherichia coli, GI1787263, Length=95, Percent_Identity=52.6315789473684, Blast_Score=108, Evalue=1e-25,
Organism=Escherichia coli, GI1786753, Length=95, Percent_Identity=52.6315789473684, Blast_Score=108, Evalue=1e-25,
Organism=Escherichia coli, GI1786570, Length=95, Percent_Identity=52.6315789473684, Blast_Score=108, Evalue=1e-25,
Organism=Escherichia coli, GI1786490, Length=95, Percent_Identity=52.6315789473684, Blast_Score=108, Evalue=1e-25,
Organism=Escherichia coli, GI1789981, Length=96, Percent_Identity=32.2916666666667, Blast_Score=63, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 14193; Mature: 14193

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
6.6 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWTTGITYIRTAQGWIYLAVVLDLYSRRIVGWHMEYYMTTALVNRALMMAINLRQPPKNL
CCCCCCEEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHH
LHHSDRGSQYASHDYQTLLTQHNMQCSMSRKGNCWDTQFNMVWNARLDLTRVGIGEVVPL
HCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEECEEEEEECCCCCEECC
R
C
>Mature Secondary Structure
MWTTGITYIRTAQGWIYLAVVLDLYSRRIVGWHMEYYMTTALVNRALMMAINLRQPPKNL
CCCCCCEEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHH
LHHSDRGSQYASHDYQTLLTQHNMQCSMSRKGNCWDTQFNMVWNARLDLTRVGIGEVVPL
HCCCCCCCCCCCHHHHHHHHHCCCEEECCCCCCCCCCEEEEEEECEEEEEECCCCCEECC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]