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The map label for this gene is cph2 [H]

Identifier: 114331019

GI number: 114331019

Start: 1052828

End: 1054075

Strand: Direct

Name: cph2 [H]

Synonym: Neut_1019

Alternate gene names: 114331019

Gene position: 1052828-1054075 (Clockwise)

Preceding gene: 114331004

Following gene: 114331022

Centisome position: 39.56

GC content: 47.6

Gene sequence:

>1248_bases
ATGATGACTGATATATCTACAACCAGAATCCTGATCCTGGATGATGATCCGTTCATACTGAAGTTGTTGGCGCGTATGTT
GATCAATCTGGGATTTCCGTCTGTTGATTGTTGCGAAAACGGTGTGGATGCATTGAAGTTGCTGGATGATGCTACTACCC
GGCCTGATCTGATTTTGTTGGATCTCAACATGCCCGGTATGGATGGTATTGAATTTGTGCGCTATCTGGTTGAACGAAAA
TTTACTGGCAGCTTGATTCTTGTCAGTGGTGAGGATGAGCGCATGCTCAAAACGACGGAAAAACTGGTACAGGCACACAA
GATTCCCATTCTGGGTTACTTGCAAAAACCGGTACAGCCTGAGGCGCTACGAATGCAATTGATGAAGCTGGCTTCGTCGT
TATCCGGACAGAGTGAGAAGGGAGCCGTCCCCAAAACCTATGATGTGGAAGCAATTAAAAATGCGCTTAATTCCGGAGAG
CTGGTCAACTATTACCAGCCAAAAGTCCGAGTAGAGACCGGGGAAATAGTTGGAGTTGAAACACTGGTGCGCTGGCATCA
TCCCGTGGACGGAGTGATTTATCCCAATCAGTTTATTGGTGCTGCGGAAAAATATGGCCTGATTAATCACCTCACTCAAA
CGGTACTCGAGCAGGCTTTTGCTCAGGCGGGAATATGGCAGAAGCTGGGTTGTGATCTAAAAGTGGCCGTCAATGTGTCA
ATGGACAACCTGACATCCCTTGATTTTCAAGATACAGTAGTTAGGTTGGCTGCCGAGACTGAGATTCCTCCCAATAGAAT
AGTGTTGGAGATTACTGAAAGTCAGTTGATGGGAGATGAACGGGTTCTGTTGGAAATTCTAACCCGCTTGCGCCTGAAAC
GTTTTCATTTGTCTATTGATGATTTTGGTACGGGACATTCTTCACTGACACAGTTGCGGGATATTCCGTTTGATGAACTC
AAGATTGATCAAGGGTTTGTGCATCACGCTTCCAAGGATGTAACGCTGCGTGCAATTTATGATGCCAGTCTGGCATTGGC
GAAGCAGTTAAATATGGAAGTAGTCGCCGAGGGGGTGGAGAGTCGTGAAGACTGGGAATTACTGCGCCAGACCGGCTGTG
ATCTGGCGCAAGGCAACTTTATTGCGCAGCCTATGCCAGCTGAAGAACTGGGTGGCTGGGTGAAAAAGTGGCGTGCTCGA
ATAGAAGCTGAATCACTCGTTTCCGGGGGTGAGGAGCAAGCGCAGTAG

Upstream 100 bases:

>100_bases
TTATGATGAGAAATTTTATTTAACTCCGTCCGGGATTATTTCGGCGTGCTATGCTTTTGTCAGGTTGCTGAAATTTGTAC
ACAGATAATTGATAAAGGCG

Downstream 100 bases:

>100_bases
AGTTCTTCAGCAGGTAGGCCAGGTTATGTTGTTCAGCCACCAGAATCTGGCAGCTTGTGATCCAGCATCACAAAGTGGTA
TTCCAGGCCACTACCTCCTG

Product: response regulator receiver modulated diguanylate phosphodiesterase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MMTDISTTRILILDDDPFILKLLARMLINLGFPSVDCCENGVDALKLLDDATTRPDLILLDLNMPGMDGIEFVRYLVERK
FTGSLILVSGEDERMLKTTEKLVQAHKIPILGYLQKPVQPEALRMQLMKLASSLSGQSEKGAVPKTYDVEAIKNALNSGE
LVNYYQPKVRVETGEIVGVETLVRWHHPVDGVIYPNQFIGAAEKYGLINHLTQTVLEQAFAQAGIWQKLGCDLKVAVNVS
MDNLTSLDFQDTVVRLAAETEIPPNRIVLEITESQLMGDERVLLEILTRLRLKRFHLSIDDFGTGHSSLTQLRDIPFDEL
KIDQGFVHHASKDVTLRAIYDASLALAKQLNMEVVAEGVESREDWELLRQTGCDLAQGNFIAQPMPAEELGGWVKKWRAR
IEAESLVSGGEEQAQ

Sequences:

>Translated_415_residues
MMTDISTTRILILDDDPFILKLLARMLINLGFPSVDCCENGVDALKLLDDATTRPDLILLDLNMPGMDGIEFVRYLVERK
FTGSLILVSGEDERMLKTTEKLVQAHKIPILGYLQKPVQPEALRMQLMKLASSLSGQSEKGAVPKTYDVEAIKNALNSGE
LVNYYQPKVRVETGEIVGVETLVRWHHPVDGVIYPNQFIGAAEKYGLINHLTQTVLEQAFAQAGIWQKLGCDLKVAVNVS
MDNLTSLDFQDTVVRLAAETEIPPNRIVLEITESQLMGDERVLLEILTRLRLKRFHLSIDDFGTGHSSLTQLRDIPFDEL
KIDQGFVHHASKDVTLRAIYDASLALAKQLNMEVVAEGVESREDWELLRQTGCDLAQGNFIAQPMPAEELGGWVKKWRAR
IEAESLVSGGEEQAQ
>Mature_415_residues
MMTDISTTRILILDDDPFILKLLARMLINLGFPSVDCCENGVDALKLLDDATTRPDLILLDLNMPGMDGIEFVRYLVERK
FTGSLILVSGEDERMLKTTEKLVQAHKIPILGYLQKPVQPEALRMQLMKLASSLSGQSEKGAVPKTYDVEAIKNALNSGE
LVNYYQPKVRVETGEIVGVETLVRWHHPVDGVIYPNQFIGAAEKYGLINHLTQTVLEQAFAQAGIWQKLGCDLKVAVNVS
MDNLTSLDFQDTVVRLAAETEIPPNRIVLEITESQLMGDERVLLEILTRLRLKRFHLSIDDFGTGHSSLTQLRDIPFDEL
KIDQGFVHHASKDVTLRAIYDASLALAKQLNMEVVAEGVESREDWELLRQTGCDLAQGNFIAQPMPAEELGGWVKKWRAR
IEAESLVSGGEEQAQ

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=245, Percent_Identity=35.9183673469388, Blast_Score=165, Evalue=4e-42,
Organism=Escherichia coli, GI1787541, Length=249, Percent_Identity=35.7429718875502, Blast_Score=151, Evalue=8e-38,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=35.7723577235772, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=35.8870967741936, Blast_Score=148, Evalue=7e-37,
Organism=Escherichia coli, GI1790496, Length=254, Percent_Identity=31.496062992126, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=31.7073170731707, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1786507, Length=249, Percent_Identity=32.9317269076305, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87081980, Length=243, Percent_Identity=33.3333333333333, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI226510982, Length=240, Percent_Identity=32.9166666666667, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1787055, Length=250, Percent_Identity=34, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI87082096, Length=288, Percent_Identity=29.8611111111111, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788849, Length=207, Percent_Identity=28.9855072463768, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 46364; Mature: 46364

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTDISTTRILILDDDPFILKLLARMLINLGFPSVDCCENGVDALKLLDDATTRPDLILL
CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHCCCCCCCEEEE
DLNMPGMDGIEFVRYLVERKFTGSLILVSGEDERMLKTTEKLVQAHKIPILGYLQKPVQP
ECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHCCCCCH
EALRMQLMKLASSLSGQSEKGAVPKTYDVEAIKNALNSGELVNYYQPKVRVETGEIVGVE
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCEEEEECCCEEHHH
TLVRWHHPVDGVIYPNQFIGAAEKYGLINHLTQTVLEQAFAQAGIWQKLGCDLKVAVNVS
HHHHHCCCCCCEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEEEC
MDNLTSLDFQDTVVRLAAETEIPPNRIVLEITESQLMGDERVLLEILTRLRLKRFHLSID
CCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHEECHH
DFGTGHSSLTQLRDIPFDELKIDQGFVHHASKDVTLRAIYDASLALAKQLNMEVVAEGVE
CCCCCHHHHHHHHCCCHHHHCCCCCHHHCCCCCEEEEEEHHHHHHHHHHHCHHHHHHHHC
SREDWELLRQTGCDLAQGNFIAQPMPAEELGGWVKKWRARIEAESLVSGGEEQAQ
CHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MMTDISTTRILILDDDPFILKLLARMLINLGFPSVDCCENGVDALKLLDDATTRPDLILL
CCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHCCCCCCCEEEE
DLNMPGMDGIEFVRYLVERKFTGSLILVSGEDERMLKTTEKLVQAHKIPILGYLQKPVQP
ECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHCCCCCH
EALRMQLMKLASSLSGQSEKGAVPKTYDVEAIKNALNSGELVNYYQPKVRVETGEIVGVE
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCEEEEECCCEEHHH
TLVRWHHPVDGVIYPNQFIGAAEKYGLINHLTQTVLEQAFAQAGIWQKLGCDLKVAVNVS
HHHHHCCCCCCEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEEEEEC
MDNLTSLDFQDTVVRLAAETEIPPNRIVLEITESQLMGDERVLLEILTRLRLKRFHLSID
CCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHHEECHH
DFGTGHSSLTQLRDIPFDELKIDQGFVHHASKDVTLRAIYDASLALAKQLNMEVVAEGVE
CCCCCHHHHHHHHCCCHHHHCCCCCHHHCCCCCEEEEEEHHHHHHHHHHHCHHHHHHHHC
SREDWELLRQTGCDLAQGNFIAQPMPAEELGGWVKKWRARIEAESLVSGGEEQAQ
CHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]