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The map label for this gene is ttk [C]

Identifier: 114331013

GI number: 114331013

Start: 1043765

End: 1044373

Strand: Reverse

Name: ttk [C]

Synonym: Neut_1011

Alternate gene names: 114331013

Gene position: 1044373-1043765 (Counterclockwise)

Preceding gene: 114331014

Following gene: 114331012

Centisome position: 39.25

GC content: 56.32

Gene sequence:

>609_bases
GTGAATGAGCGTCCTCAATACTTGTCCGCTGAAGAGCGACGAGCAGCCACAGTGCAAGCAGTGCTCGATTTGGCTGCCGA
GCAGAACCCGGCCGAGATCACAACCACAGCCATTGCTGACCGGATGGGTTTGACGCAGGGCGCGTTGTTTCGTCATTTCC
CCACCAAGGACGCCATCTTGGAAGCAACGGTGTCCTGGGTTGGCAAACGCTTGCTGACCAGTGCGGACAAGGCGGCAGCT
GACGCTGTATCCCCTGCAGCAGCGCTCGAAGCCATGTTTATGACACATATCGACTTTGTCGCCAAACACCCTGGTGTGCC
ACGTATGCTGTTTGGAGAATTACAGCGCTCTGGTGAAACGCTCACCAAGCATATGGCGCAGACCTTGATCCGTCAGTACC
GACAGCGGCTGCGTCACCTGGTGGAAGCTGGCAAAGCTCAGGGTGAGCTAGACGCAGAGCTGAACGTGGATGCCGCTACT
ACGTTGTTCATAGGCACTATCCAGGGATTGGTCATGCAGGCACTGTTGGCCGGCAAGGTCAATCAGATTCGACGCGATGC
ACCAGCCGTGTTTGCCATCTATCGCCGTGGTATTGGAGCGACAAAATGA

Upstream 100 bases:

>100_bases
GCCACACTCATTCTTCTCCAAATTAGTGGATTCTATCTTTCACCAAAGTTATTTTTCATGCTAAAGTAGTAATCAATTAC
TTACTTTAAAGGTGTAGGCA

Downstream 100 bases:

>100_bases
AAACTCTCTGTGTTAGTACATCCAGTCTGCCAACGTCGAACCAGAGCACCATAAAACTCCGGCTTCAGCACATGAAAGGC
GTGCAATGAGTAAAATCATT

Product: transcriptional regulator, TetR family protein

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; Regulatory Protein TetR; HTH-Type Transcriptional Regulator; Transcriptional Regulator Of TetR Family Protein

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MNERPQYLSAEERRAATVQAVLDLAAEQNPAEITTTAIADRMGLTQGALFRHFPTKDAILEATVSWVGKRLLTSADKAAA
DAVSPAAALEAMFMTHIDFVAKHPGVPRMLFGELQRSGETLTKHMAQTLIRQYRQRLRHLVEAGKAQGELDAELNVDAAT
TLFIGTIQGLVMQALLAGKVNQIRRDAPAVFAIYRRGIGATK

Sequences:

>Translated_202_residues
MNERPQYLSAEERRAATVQAVLDLAAEQNPAEITTTAIADRMGLTQGALFRHFPTKDAILEATVSWVGKRLLTSADKAAA
DAVSPAAALEAMFMTHIDFVAKHPGVPRMLFGELQRSGETLTKHMAQTLIRQYRQRLRHLVEAGKAQGELDAELNVDAAT
TLFIGTIQGLVMQALLAGKVNQIRRDAPAVFAIYRRGIGATK
>Mature_202_residues
MNERPQYLSAEERRAATVQAVLDLAAEQNPAEITTTAIADRMGLTQGALFRHFPTKDAILEATVSWVGKRLLTSADKAAA
DAVSPAAALEAMFMTHIDFVAKHPGVPRMLFGELQRSGETLTKHMAQTLIRQYRQRLRHLVEAGKAQGELDAELNVDAAT
TLFIGTIQGLVMQALLAGKVNQIRRDAPAVFAIYRRGIGATK

Specific function: Unknown. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22021; Mature: 22021

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNERPQYLSAEERRAATVQAVLDLAAEQNPAEITTTAIADRMGLTQGALFRHFPTKDAIL
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHH
EATVSWVGKRLLTSADKAAADAVSPAAALEAMFMTHIDFVAKHPGVPRMLFGELQRSGET
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LTKHMAQTLIRQYRQRLRHLVEAGKAQGELDAELNVDAATTLFIGTIQGLVMQALLAGKV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NQIRRDAPAVFAIYRRGIGATK
HHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNERPQYLSAEERRAATVQAVLDLAAEQNPAEITTTAIADRMGLTQGALFRHFPTKDAIL
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHH
EATVSWVGKRLLTSADKAAADAVSPAAALEAMFMTHIDFVAKHPGVPRMLFGELQRSGET
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LTKHMAQTLIRQYRQRLRHLVEAGKAQGELDAELNVDAATTLFIGTIQGLVMQALLAGKV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
NQIRRDAPAVFAIYRRGIGATK
HHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA