BacMap

Definition	Nitrosomonas eutropha C91, complete genome.
Accession	NC_008344
Length	2,661,057

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The map label for this gene is ybbO [H]

Identifier: 114330992

GI number: 114330992

Start: 1022363

End: 1023202

Strand: Reverse

Name: ybbO [H]

Synonym: Neut_0990

Alternate gene names: 114330992

Gene position: 1023202-1022363 (Counterclockwise)

Preceding gene: 114330993

Following gene: 114330991

Centisome position: 38.45

GC content: 49.88

Gene sequence:

>840_bases
ATGAAAAAATCCATATTGATTACCGGTTGCTCCAGCGGCATTGGCTATTGCGTTGCGCATGAATTGCAGACGCGCGGTTA
CCGTGTTTTTGCCACCGCCCGCAGGCAGGAAAGTGTGGACATGTTGCTTGCTGAGGGATTAGAAAGTTTCCAACTTGATC
TGAACGATTCCAGCTCAATTCAACGCGCAGTTGAAGAAACCCTGAATCGCAGCAATGGCCAATTGTATGCATTATTTAAC
AATGGTGCATATGGCCTGCCTGGGGCGGTTGAAGATCTCAGTCGGGAAGCCATGCGCGCCCAATTTGAAACCAATTTTTT
TGGTTGGGTGGAGCTGACCAATCTGATCTTGCCCGTCATGCGCAAGCAGGAACAGGGTCGTATCATACAAAACAGCTCCA
TACTTGGCTTTGCTGCCATGCCGTTCCGTGGCGCGTACAACGCCTCCAAATTTGCAGTCGAAGGCTGGAGCGATACCTTA
CGGCTGGAACTGAGAGGGAGCAATATTTTTGTCAGCCTGATCGAACCAGGGCCAATTGCCACGAAATTCCGTGCCAACGC
AATGAAGGCGTTTGAACGCTACATCGATATCGAGCACAGTATTCACCGCGAGAAATACCTCATTGTTCAGGACCGGCTGA
ACAAGCAGGGACCCACTGTCCCTTTCACTCTGCCTCCAGAAGCCGTATTGAAAAAGGTGATCTGTATACTTGAATCACGT
ACCCCTGATGCCCGCTATTACGTTACCTTTCCGACCCACATGTTTGGCCTTCTCAAGCGCATCTTGCCCGTTTCTGTACT
GGATAAATTATTGGCTAAGGCCGGGCACAAGCATCAGTAA

Upstream 100 bases:

>100_bases
GAACTTTAGGGAACTTCGGACAACCCGCAGCGTAAATTGATCATCACCCAGATGCTGCTCATACTCCCTCTTTTATTTTA
ATATCGCTCAAATCCAGCTT

Downstream 100 bases:

>100_bases
AGAAATATAGTGCTCAAATATTTCCAGACACATAGTTAGATTCTTTTCAAGAATTATGCATAATGAATGCTTGGTAATTT
ATCGTTGCAGCCGAAGGGCA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKKSILITGCSSGIGYCVAHELQTRGYRVFATARRQESVDMLLAEGLESFQLDLNDSSSIQRAVEETLNRSNGQLYALFN
NGAYGLPGAVEDLSREAMRAQFETNFFGWVELTNLILPVMRKQEQGRIIQNSSILGFAAMPFRGAYNASKFAVEGWSDTL
RLELRGSNIFVSLIEPGPIATKFRANAMKAFERYIDIEHSIHREKYLIVQDRLNKQGPTVPFTLPPEAVLKKVICILESR
TPDARYYVTFPTHMFGLLKRILPVSVLDKLLAKAGHKHQ

Sequences:

>Translated_279_residues
MKKSILITGCSSGIGYCVAHELQTRGYRVFATARRQESVDMLLAEGLESFQLDLNDSSSIQRAVEETLNRSNGQLYALFN
NGAYGLPGAVEDLSREAMRAQFETNFFGWVELTNLILPVMRKQEQGRIIQNSSILGFAAMPFRGAYNASKFAVEGWSDTL
RLELRGSNIFVSLIEPGPIATKFRANAMKAFERYIDIEHSIHREKYLIVQDRLNKQGPTVPFTLPPEAVLKKVICILESR
TPDARYYVTFPTHMFGLLKRILPVSVLDKLLAKAGHKHQ
>Mature_279_residues
MKKSILITGCSSGIGYCVAHELQTRGYRVFATARRQESVDMLLAEGLESFQLDLNDSSSIQRAVEETLNRSNGQLYALFN
NGAYGLPGAVEDLSREAMRAQFETNFFGWVELTNLILPVMRKQEQGRIIQNSSILGFAAMPFRGAYNASKFAVEGWSDTL
RLELRGSNIFVSLIEPGPIATKFRANAMKAFERYIDIEHSIHREKYLIVQDRLNKQGPTVPFTLPPEAVLKKVICILESR
TPDARYYVTFPTHMFGLLKRILPVSVLDKLLAKAGHKHQ

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=197, Percent_Identity=39.0862944162437, Blast_Score=132, Evalue=4e-31,
Organism=Homo sapiens, GI223718074, Length=263, Percent_Identity=30.7984790874525, Blast_Score=117, Evalue=9e-27,
Organism=Homo sapiens, GI40548397, Length=286, Percent_Identity=30.7692307692308, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI214010158, Length=286, Percent_Identity=30.7692307692308, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI214010156, Length=286, Percent_Identity=30.7692307692308, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI22758144, Length=286, Percent_Identity=30.7692307692308, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI20149619, Length=228, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI44680136, Length=185, Percent_Identity=33.5135135135135, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI44680133, Length=185, Percent_Identity=33.5135135135135, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI17738292, Length=185, Percent_Identity=33.5135135135135, Blast_Score=101, Evalue=7e-22,
Organism=Homo sapiens, GI150247226, Length=199, Percent_Identity=33.1658291457286, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI22507405, Length=288, Percent_Identity=30.9027777777778, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI19743808, Length=299, Percent_Identity=28.4280936454849, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI7706318, Length=195, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI119392083, Length=187, Percent_Identity=35.2941176470588, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI50726952, Length=286, Percent_Identity=29.3706293706294, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4504503, Length=288, Percent_Identity=25.6944444444444, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI157739938, Length=185, Percent_Identity=29.7297297297297, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI32483357, Length=188, Percent_Identity=30.3191489361702, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI32455239, Length=205, Percent_Identity=29.7560975609756, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI5031765, Length=205, Percent_Identity=29.7560975609756, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4503817, Length=185, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=25.3112033195021, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031737, Length=184, Percent_Identity=29.3478260869565, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI33667109, Length=184, Percent_Identity=29.3478260869565, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI40254992, Length=184, Percent_Identity=28.2608695652174, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1786701, Length=271, Percent_Identity=42.0664206642066, Blast_Score=207, Evalue=8e-55,
Organism=Escherichia coli, GI1787820, Length=203, Percent_Identity=31.0344827586207, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787335, Length=185, Percent_Identity=29.7297297297297, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI87082100, Length=185, Percent_Identity=28.1081081081081, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=211, Percent_Identity=32.2274881516588, Blast_Score=101, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17570069, Length=211, Percent_Identity=31.2796208530806, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17557780, Length=197, Percent_Identity=30.4568527918782, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI193210355, Length=284, Percent_Identity=28.169014084507, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17507613, Length=298, Percent_Identity=24.8322147651007, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI32563809, Length=298, Percent_Identity=24.8322147651007, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI115534660, Length=181, Percent_Identity=28.7292817679558, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=28.6792452830189, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=188, Percent_Identity=29.2553191489362, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=212, Percent_Identity=32.0754716981132, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6322067, Length=190, Percent_Identity=30.5263157894737, Blast_Score=78, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=36.734693877551, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24651139, Length=298, Percent_Identity=29.8657718120805, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24580925, Length=193, Percent_Identity=32.1243523316062, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28571526, Length=205, Percent_Identity=31.219512195122, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI21357041, Length=206, Percent_Identity=30.0970873786408, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI21356301, Length=185, Percent_Identity=28.6486486486486, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI21355319, Length=188, Percent_Identity=29.2553191489362, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24644339, Length=206, Percent_Identity=31.0679611650485, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24643142, Length=221, Percent_Identity=27.6018099547511, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=28.7179487179487, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641232, Length=201, Percent_Identity=27.8606965174129, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI23397609, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31416; Mature: 31416

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSILITGCSSGIGYCVAHELQTRGYRVFATARRQESVDMLLAEGLESFQLDLNDSSSI
CCCCEEEEECCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCHHHEEEECCCCHHH
QRAVEETLNRSNGQLYALFNNGAYGLPGAVEDLSREAMRAQFETNFFGWVELTNLILPVM
HHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
RKQEQGRIIQNSSILGFAAMPFRGAYNASKFAVEGWSDTLRLELRGSNIFVSLIEPGPIA
HHHHCCCEEECCCEEEEEECCCCCCCCCCEEEEECCCCEEEEEEECCEEEEEEECCCCCC
TKFRANAMKAFERYIDIEHSIHREKYLIVQDRLNKQGPTVPFTLPPEAVLKKVICILESR
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCEECCHHHHHHHHHHHHCCC
TPDARYYVTFPTHMFGLLKRILPVSVLDKLLAKAGHKHQ
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKKSILITGCSSGIGYCVAHELQTRGYRVFATARRQESVDMLLAEGLESFQLDLNDSSSI
CCCCEEEEECCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCHHHEEEECCCCHHH
QRAVEETLNRSNGQLYALFNNGAYGLPGAVEDLSREAMRAQFETNFFGWVELTNLILPVM
HHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
RKQEQGRIIQNSSILGFAAMPFRGAYNASKFAVEGWSDTLRLELRGSNIFVSLIEPGPIA
HHHHCCCEEECCCEEEEEECCCCCCCCCCEEEEECCCCEEEEEEECCEEEEEEECCCCCC
TKFRANAMKAFERYIDIEHSIHREKYLIVQDRLNKQGPTVPFTLPPEAVLKKVICILESR
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCEECCHHHHHHHHHHHHCCC
TPDARYYVTFPTHMFGLLKRILPVSVLDKLLAKAGHKHQ
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]