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The map label for this gene is rbcR [H]

Identifier: 114330813

GI number: 114330813

Start: 821232

End: 822152

Strand: Reverse

Name: rbcR [H]

Synonym: Neut_0803

Alternate gene names: 114330813

Gene position: 822152-821232 (Counterclockwise)

Preceding gene: 114330830

Following gene: 114330807

Centisome position: 30.9

GC content: 55.81

Gene sequence:

>921_bases
ATGTATCTGACTTTTCGCCAACTACAAATTTTCGACGCTGTCATGCGTCGCCAGAGCTTCACGCGCGCGGCTGACGTGCT
ACATCTGACGCAACCTGCCGTATCAATGCAGATGCGGCAGCTCGAAGAGCAAGTCGGTGTACCCTTGTTCGACCAGGTCG
GCAAACAAATCCAACCCACCGACGCCGGACGCGAGCTGCACCGCCACGCGATTATCATTGCGGCGAAAATGCAGGACCTC
AGCGCCGCAATGGAAGAATTCAGTGGCCTGCGCCGAGGCGAATTGGATCTAGTGGTGGCGAGTACCGCGAATTACTTCGC
GCCCAAGTTGATTGCCGCATTCTGCAGACAGCACGCTAAAGTGCAGGTGCGACTGCGAGTGTCGAACCAGGAACAGATTC
TGGACATGCTGACCACGTCGAACATGGATCTGGCGATCATGGGACAGCCACCGAAGAACTCAGAATTAGTCGCTCAAGCC
TTTCTTGACAATCCACTGGTCATAATTGCCGCACCGACCCATCCGCTAGCTGCCAAGAGTCGGGTCGCACTCAAACACCT
GGAGCGCGAAACCTTCATCACCCGCGAGCCTGGCTCAGGAACGCGCAAAGCGGCTGAGCGGCATTTCTCCCGGTACGGAG
TAGAGTTTCATTCGGTAATGGAAATGAGTAGCAACGAGGCGATCAAGCAGGCGGTGCAAGCCGAATTAGGCCTGGGCATC
CTATCCTTGCATACACTCGAACTCGAACTGGCGATGCAGCGACTGGCCATGCTCAACGTCGAACGCTTTCCGATTATGCG
GCAGTGGTTCATCGTGCATCGCAAAGGCAAGCGGCTGTCGACCGTAGCGCAAGCCTTTCTTGACTTTCTGATTCGAGAGG
CAAGACATCTGGCTTCGCTCCAGGATCCTGCTACCACCTAA

Upstream 100 bases:

>100_bases
ATGGATTCATCGATTTGCTTGCAAACATAGTATCGAATGTAATCATAAAATACAACTCAATCTTCTGATAGAATGCATTA
GATAAACTTATGTGAAAATT

Downstream 100 bases:

>100_bases
TTCAGGCCATGAACTTGACCGGACGGCCAACCTGGATATCGCTTACGAAAATCACTCCGGAATGAGCCTCGAAAAACGGC
TGAAAGCCTTCGAGCAATGC

Product: transcriptional regulator, LysR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MYLTFRQLQIFDAVMRRQSFTRAADVLHLTQPAVSMQMRQLEEQVGVPLFDQVGKQIQPTDAGRELHRHAIIIAAKMQDL
SAAMEEFSGLRRGELDLVVASTANYFAPKLIAAFCRQHAKVQVRLRVSNQEQILDMLTTSNMDLAIMGQPPKNSELVAQA
FLDNPLVIIAAPTHPLAAKSRVALKHLERETFITREPGSGTRKAAERHFSRYGVEFHSVMEMSSNEAIKQAVQAELGLGI
LSLHTLELELAMQRLAMLNVERFPIMRQWFIVHRKGKRLSTVAQAFLDFLIREARHLASLQDPATT

Sequences:

>Translated_306_residues
MYLTFRQLQIFDAVMRRQSFTRAADVLHLTQPAVSMQMRQLEEQVGVPLFDQVGKQIQPTDAGRELHRHAIIIAAKMQDL
SAAMEEFSGLRRGELDLVVASTANYFAPKLIAAFCRQHAKVQVRLRVSNQEQILDMLTTSNMDLAIMGQPPKNSELVAQA
FLDNPLVIIAAPTHPLAAKSRVALKHLERETFITREPGSGTRKAAERHFSRYGVEFHSVMEMSSNEAIKQAVQAELGLGI
LSLHTLELELAMQRLAMLNVERFPIMRQWFIVHRKGKRLSTVAQAFLDFLIREARHLASLQDPATT
>Mature_306_residues
MYLTFRQLQIFDAVMRRQSFTRAADVLHLTQPAVSMQMRQLEEQVGVPLFDQVGKQIQPTDAGRELHRHAIIIAAKMQDL
SAAMEEFSGLRRGELDLVVASTANYFAPKLIAAFCRQHAKVQVRLRVSNQEQILDMLTTSNMDLAIMGQPPKNSELVAQA
FLDNPLVIIAAPTHPLAAKSRVALKHLERETFITREPGSGTRKAAERHFSRYGVEFHSVMEMSSNEAIKQAVQAELGLGI
LSLHTLELELAMQRLAMLNVERFPIMRQWFIVHRKGKRLSTVAQAFLDFLIREARHLASLQDPATT

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=32.4137931034483, Blast_Score=151, Evalue=4e-38,
Organism=Escherichia coli, GI157672245, Length=289, Percent_Identity=33.2179930795848, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1788748, Length=298, Percent_Identity=26.510067114094, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787530, Length=295, Percent_Identity=26.1016949152542, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=25.5972696245734, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789204, Length=243, Percent_Identity=24.6913580246914, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790208, Length=249, Percent_Identity=26.5060240963855, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790399, Length=280, Percent_Identity=22.5, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787879, Length=245, Percent_Identity=26.1224489795918, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787601, Length=309, Percent_Identity=24.9190938511327, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786401, Length=301, Percent_Identity=26.2458471760797, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87082132, Length=286, Percent_Identity=24.8251748251748, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788887, Length=200, Percent_Identity=27.5, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=25, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787806, Length=293, Percent_Identity=24.9146757679181, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994962, Length=158, Percent_Identity=31.0126582278481, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081904, Length=217, Percent_Identity=24.4239631336406, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34532; Mature: 34532

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLTFRQLQIFDAVMRRQSFTRAADVLHLTQPAVSMQMRQLEEQVGVPLFDQVGKQIQPT
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCC
DAGRELHRHAIIIAAKMQDLSAAMEEFSGLRRGELDLVVASTANYFAPKLIAAFCRQHAK
HHHHHHHHHHEEEEHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE
VQVRLRVSNQEQILDMLTTSNMDLAIMGQPPKNSELVAQAFLDNPLVIIAAPTHPLAAKS
EEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHH
RVALKHLERETFITREPGSGTRKAAERHFSRYGVEFHSVMEMSSNEAIKQAVQAELGLGI
HHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHCCHH
LSLHTLELELAMQRLAMLNVERFPIMRQWFIVHRKGKRLSTVAQAFLDFLIREARHLASL
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
QDPATT
CCCCCC
>Mature Secondary Structure
MYLTFRQLQIFDAVMRRQSFTRAADVLHLTQPAVSMQMRQLEEQVGVPLFDQVGKQIQPT
CCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCC
DAGRELHRHAIIIAAKMQDLSAAMEEFSGLRRGELDLVVASTANYFAPKLIAAFCRQHAK
HHHHHHHHHHEEEEHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCE
VQVRLRVSNQEQILDMLTTSNMDLAIMGQPPKNSELVAQAFLDNPLVIIAAPTHPLAAKS
EEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHH
RVALKHLERETFITREPGSGTRKAAERHFSRYGVEFHSVMEMSSNEAIKQAVQAELGLGI
HHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHCCHH
LSLHTLELELAMQRLAMLNVERFPIMRQWFIVHRKGKRLSTVAQAFLDFLIREARHLASL
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
QDPATT
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]