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The map label for this gene is yciR [C]

Identifier: 114330543

GI number: 114330543

Start: 546247

End: 548367

Strand: Reverse

Name: yciR [C]

Synonym: Neut_0525

Alternate gene names: 114330543

Gene position: 548367-546247 (Counterclockwise)

Preceding gene: 114330545

Following gene: 114330542

Centisome position: 20.61

GC content: 51.34

Gene sequence:

>2121_bases
ATGCAAGCCACATACAATTCCTGGCTGGTTGGCTTGTCACTTGTGGTGGCCATGCTTGCCTCTTATACCGCTCTTGATCT
ATCGGGCCATATTTCCGTATTGACGCGTCCCAGGCTGCGCTATACGTGGCTTGCCGGCGGTGCTGCAGCGATGGGAATTG
GTATCTGGTCGATGCATTTCGTTGGAATGCTCTCCTTTTCGCTGCCTACTCCACTTGGCTACGATTTTGTGACTACCGGC
TATTCACTGGTGATTGCCATGCTGCTTTCCTATTCTGTGCTGTATGTGGTCACGCAAACTAAATTGACGATTTCCCGTCT
CCTCATCGGCGGCACTCTGATGGGCTTTGGTATCTCCGGCATGCATTACACCGGCATGGCTGCTATGGAGATGCAACCTG
CGATTCACTACGATCCGCTGCTGTTCGTCACCTCGATTGTCATTGCCATTGCTGCGGCTAACGCTGCACTGTGGATTGCT
TACATTCTCAGCGACGCGGACCAGGTCCACCTGGTCGCCAAGCGCATCGGTGCGTCATTCCTGATGGGTATCGCGATTAC
CGGGATGCACTACACCGGCATGGCTGCCGCCTATTTTCCACCCGGATCAACTAGCAGCACAGCCAACGATATCGATTCGC
AATGGCTCGCCACTACCATCATTTTGCTCACATTCCTGATCCTGATCATTACACTCACACTATCTCGCTACGATGCGAGG
GCAAACTTTCTTACTGGCTCAGTATCCCGCCTCAACGACCAGATCGTCCGCATGGCAACATTTGATGCCTTGACGGATTT
GCCAAACCGCTGGACGCTTATAGAGCGGATGGAACGTGCGATTGAAATTTCCAGGCGCGATGGGAATATGTTTGCCATCC
TGTTTATGGATCTCGATGGATTCAAGATCATCAATGATTCTCTTGGGCATTCAACTGGGGATGAAGTCCTGAAGGCGTTC
GCGCTGAGGTTGCTGCATTGCGTGCGCGGCAGCGACACGGTCGCCCGGCTGGGAGGTGATGAATTTGTGGCACTGCTTGA
AAATATCGCGACTACGGACGATGCCTCAGAAATGGCAGATAGCATACTCAGCCGCATGCGCCAAGGTCTATGGGCCAATA
ACCAGCCTCTACAGGTGATGCCAAGTATCGGAATTACATTATTTCCACAAGACGGCGATACCGTTGAAAAACTGCTGAAG
AACGCGGATGCCGCGATGTACGAAGCAAAACGGGGTGGGCGCAGCACCTATCGATTTTTTGAGACGAGCATGAATGAAGC
GGCCACTCGCGCGCTGCAGATTCAGCGTGTCTTGCACGAAGCACTCAAAGTTGGCTACTTTTCTCTGTATTTTCAGCCAA
AATTCCGTGGCAGCAATAGTGAGCTAGTCGGTGCCGAGGCGCTACTCCGTCTGCGCCATCCAGAATTCGGACTTTTGTCA
CCGATGGAGTTCATCCCGATCGCTGAACGTTCCGGGCAAATCATCCCAATAGGTTACTGGGTGGTGCGCGAAACTTGCCA
ACAACTACGCCGCTGGAAGGAAGATGGCTTGCCAGCAATCAAGGTGGCCATCAATCTGTCTCCCCGACAACTGGAGCAAC
CGGATCTGATCACAATGATGCTGGATATCGTCCAGTCTGAACAAATCCCATGTGAACAGATTATGTTTGAAATCACAGAA
ACCGTGGCGATGCAGGATGCACCCAAAACGACTGATATGATCCATAAGTTTCAGGAAAACAACTTCGAGATCGCCATCGA
CGATTTTGGGACAGGTTATTCGAGCCTTGCCTACTTGCAACGCTTCCGTGCCAAGCAACTGAAGATAGATCGTTTTTTCA
CCAGCGGTATGGATGAGTGCGGACCTGAAGGCAGCGCCATCGTTTCCGCAATCATCAAACTTGCCCATACACTCGGAATG
GATGTGGTGGCTGAGGGCGTCGAGACCGATTCGCAGCTCACGAAATTAAAAAGCATGATGTGCGATGAAGTACAGGGATT
CCTGCTGGGCAAGCCTGTGACAGCAGACGAATTTAGCAAATTGCTGCATCAGCATACATGTAACGACCTGCATTTAAAAC
TGGATCAACCAGCATTCAATGCGATTTTGAGCCGGAAATAA

Upstream 100 bases:

>100_bases
ACGATCTCAGAAAATAGATTATAAGTACCGTGGCAGTGCTTAAAAGAAGTGCTCTCGTTGCCGTTATCCTCTATGTTACT
AATCCTGTACCGGAACTGTC

Downstream 100 bases:

>100_bases
CTACAATTATCCATGCGCTAGAGCATGGGTTTTAGGAGATAAGATGCATATTTGGGTCGATGCGGATGCATGTCCAGTCG
TGATCAAAGATATTTTATTT

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 706; Mature: 706

Protein sequence:

>706_residues
MQATYNSWLVGLSLVVAMLASYTALDLSGHISVLTRPRLRYTWLAGGAAAMGIGIWSMHFVGMLSFSLPTPLGYDFVTTG
YSLVIAMLLSYSVLYVVTQTKLTISRLLIGGTLMGFGISGMHYTGMAAMEMQPAIHYDPLLFVTSIVIAIAAANAALWIA
YILSDADQVHLVAKRIGASFLMGIAITGMHYTGMAAAYFPPGSTSSTANDIDSQWLATTIILLTFLILIITLTLSRYDAR
ANFLTGSVSRLNDQIVRMATFDALTDLPNRWTLIERMERAIEISRRDGNMFAILFMDLDGFKIINDSLGHSTGDEVLKAF
ALRLLHCVRGSDTVARLGGDEFVALLENIATTDDASEMADSILSRMRQGLWANNQPLQVMPSIGITLFPQDGDTVEKLLK
NADAAMYEAKRGGRSTYRFFETSMNEAATRALQIQRVLHEALKVGYFSLYFQPKFRGSNSELVGAEALLRLRHPEFGLLS
PMEFIPIAERSGQIIPIGYWVVRETCQQLRRWKEDGLPAIKVAINLSPRQLEQPDLITMMLDIVQSEQIPCEQIMFEITE
TVAMQDAPKTTDMIHKFQENNFEIAIDDFGTGYSSLAYLQRFRAKQLKIDRFFTSGMDECGPEGSAIVSAIIKLAHTLGM
DVVAEGVETDSQLTKLKSMMCDEVQGFLLGKPVTADEFSKLLHQHTCNDLHLKLDQPAFNAILSRK

Sequences:

>Translated_706_residues
MQATYNSWLVGLSLVVAMLASYTALDLSGHISVLTRPRLRYTWLAGGAAAMGIGIWSMHFVGMLSFSLPTPLGYDFVTTG
YSLVIAMLLSYSVLYVVTQTKLTISRLLIGGTLMGFGISGMHYTGMAAMEMQPAIHYDPLLFVTSIVIAIAAANAALWIA
YILSDADQVHLVAKRIGASFLMGIAITGMHYTGMAAAYFPPGSTSSTANDIDSQWLATTIILLTFLILIITLTLSRYDAR
ANFLTGSVSRLNDQIVRMATFDALTDLPNRWTLIERMERAIEISRRDGNMFAILFMDLDGFKIINDSLGHSTGDEVLKAF
ALRLLHCVRGSDTVARLGGDEFVALLENIATTDDASEMADSILSRMRQGLWANNQPLQVMPSIGITLFPQDGDTVEKLLK
NADAAMYEAKRGGRSTYRFFETSMNEAATRALQIQRVLHEALKVGYFSLYFQPKFRGSNSELVGAEALLRLRHPEFGLLS
PMEFIPIAERSGQIIPIGYWVVRETCQQLRRWKEDGLPAIKVAINLSPRQLEQPDLITMMLDIVQSEQIPCEQIMFEITE
TVAMQDAPKTTDMIHKFQENNFEIAIDDFGTGYSSLAYLQRFRAKQLKIDRFFTSGMDECGPEGSAIVSAIIKLAHTLGM
DVVAEGVETDSQLTKLKSMMCDEVQGFLLGKPVTADEFSKLLHQHTCNDLHLKLDQPAFNAILSRK
>Mature_706_residues
MQATYNSWLVGLSLVVAMLASYTALDLSGHISVLTRPRLRYTWLAGGAAAMGIGIWSMHFVGMLSFSLPTPLGYDFVTTG
YSLVIAMLLSYSVLYVVTQTKLTISRLLIGGTLMGFGISGMHYTGMAAMEMQPAIHYDPLLFVTSIVIAIAAANAALWIA
YILSDADQVHLVAKRIGASFLMGIAITGMHYTGMAAAYFPPGSTSSTANDIDSQWLATTIILLTFLILIITLTLSRYDAR
ANFLTGSVSRLNDQIVRMATFDALTDLPNRWTLIERMERAIEISRRDGNMFAILFMDLDGFKIINDSLGHSTGDEVLKAF
ALRLLHCVRGSDTVARLGGDEFVALLENIATTDDASEMADSILSRMRQGLWANNQPLQVMPSIGITLFPQDGDTVEKLLK
NADAAMYEAKRGGRSTYRFFETSMNEAATRALQIQRVLHEALKVGYFSLYFQPKFRGSNSELVGAEALLRLRHPEFGLLS
PMEFIPIAERSGQIIPIGYWVVRETCQQLRRWKEDGLPAIKVAINLSPRQLEQPDLITMMLDIVQSEQIPCEQIMFEITE
TVAMQDAPKTTDMIHKFQENNFEIAIDDFGTGYSSLAYLQRFRAKQLKIDRFFTSGMDECGPEGSAIVSAIIKLAHTLGM
DVVAEGVETDSQLTKLKSMMCDEVQGFLLGKPVTADEFSKLLHQHTCNDLHLKLDQPAFNAILSRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=434, Percent_Identity=34.5622119815668, Blast_Score=259, Evalue=4e-70,
Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=29.3706293706294, Blast_Score=196, Evalue=5e-51,
Organism=Escherichia coli, GI226510982, Length=455, Percent_Identity=26.5934065934066, Blast_Score=176, Evalue=4e-45,
Organism=Escherichia coli, GI87081845, Length=265, Percent_Identity=31.3207547169811, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1788849, Length=433, Percent_Identity=28.6374133949192, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=31.8548387096774, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1790496, Length=259, Percent_Identity=33.2046332046332, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI87081980, Length=238, Percent_Identity=34.453781512605, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1788502, Length=255, Percent_Identity=32.9411764705882, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1787055, Length=246, Percent_Identity=32.520325203252, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1786507, Length=268, Percent_Identity=28.7313432835821, Blast_Score=113, Evalue=3e-26,
Organism=Escherichia coli, GI87082096, Length=440, Percent_Identity=25.6818181818182, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=37.5757575757576, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1788381, Length=170, Percent_Identity=34.7058823529412, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=32.9268292682927, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI87082007, Length=160, Percent_Identity=33.125, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=35.3293413173653, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787262, Length=225, Percent_Identity=28.4444444444444, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787802, Length=193, Percent_Identity=30.5699481865285, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=223, Percent_Identity=27.3542600896861, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787410, Length=151, Percent_Identity=31.1258278145695, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=205, Percent_Identity=28.780487804878, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=28.3132530120482, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 78203; Mature: 78203

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQATYNSWLVGLSLVVAMLASYTALDLSGHISVLTRPRLRYTWLAGGAAAMGIGIWSMHF
CCCCHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHH
VGMLSFSLPTPLGYDFVTTGYSLVIAMLLSYSVLYVVTQTKLTISRLLIGGTLMGFGISG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
MHYTGMAAMEMQPAIHYDPLLFVTSIVIAIAAANAALWIAYILSDADQVHLVAKRIGASF
CCCCCEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LMGIAITGMHYTGMAAAYFPPGSTSSTANDIDSQWLATTIILLTFLILIITLTLSRYDAR
HHHHHHHCCEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANFLTGSVSRLNDQIVRMATFDALTDLPNRWTLIERMERAIEISRRDGNMFAILFMDLDG
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
FKIINDSLGHSTGDEVLKAFALRLLHCVRGSDTVARLGGDEFVALLENIATTDDASEMAD
CEEECHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCCCHHHHHH
SILSRMRQGLWANNQPLQVMPSIGITLFPQDGDTVEKLLKNADAAMYEAKRGGRSTYRFF
HHHHHHHHCCCCCCCCCEEECCCCEEEECCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHH
ETSMNEAATRALQIQRVLHEALKVGYFSLYFQPKFRGSNSELVGAEALLRLRHPEFGLLS
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
PMEFIPIAERSGQIIPIGYWVVRETCQQLRRWKEDGLPAIKVAINLSPRQLEQPDLITMM
CHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCHHHHHH
LDIVQSEQIPCEQIMFEITETVAMQDAPKTTDMIHKFQENNFEIAIDDFGTGYSSLAYLQ
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
RFRAKQLKIDRFFTSGMDECGPEGSAIVSAIIKLAHTLGMDVVAEGVETDSQLTKLKSMM
HHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHH
CDEVQGFLLGKPVTADEFSKLLHQHTCNDLHLKLDQPAFNAILSRK
HHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCC
>Mature Secondary Structure
MQATYNSWLVGLSLVVAMLASYTALDLSGHISVLTRPRLRYTWLAGGAAAMGIGIWSMHF
CCCCHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCEEEEEECCCHHHHHHHHHHHHH
VGMLSFSLPTPLGYDFVTTGYSLVIAMLLSYSVLYVVTQTKLTISRLLIGGTLMGFGISG
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
MHYTGMAAMEMQPAIHYDPLLFVTSIVIAIAAANAALWIAYILSDADQVHLVAKRIGASF
CCCCCEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LMGIAITGMHYTGMAAAYFPPGSTSSTANDIDSQWLATTIILLTFLILIITLTLSRYDAR
HHHHHHHCCEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANFLTGSVSRLNDQIVRMATFDALTDLPNRWTLIERMERAIEISRRDGNMFAILFMDLDG
HHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
FKIINDSLGHSTGDEVLKAFALRLLHCVRGSDTVARLGGDEFVALLENIATTDDASEMAD
CEEECHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHCCCCCHHHHHH
SILSRMRQGLWANNQPLQVMPSIGITLFPQDGDTVEKLLKNADAAMYEAKRGGRSTYRFF
HHHHHHHHCCCCCCCCCEEECCCCEEEECCCCHHHHHHHHCCCHHHHHHHCCCCHHHHHH
ETSMNEAATRALQIQRVLHEALKVGYFSLYFQPKFRGSNSELVGAEALLRLRHPEFGLLS
HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCC
PMEFIPIAERSGQIIPIGYWVVRETCQQLRRWKEDGLPAIKVAINLSPRQLEQPDLITMM
CHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCHHHHHH
LDIVQSEQIPCEQIMFEITETVAMQDAPKTTDMIHKFQENNFEIAIDDFGTGYSSLAYLQ
HHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
RFRAKQLKIDRFFTSGMDECGPEGSAIVSAIIKLAHTLGMDVVAEGVETDSQLTKLKSMM
HHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHH
CDEVQGFLLGKPVTADEFSKLLHQHTCNDLHLKLDQPAFNAILSRK
HHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]