Click here to switch to the map view.

The map label for this gene is yqfA [C]

Identifier: 114330506

GI number: 114330506

Start: 502949

End: 503608

Strand: Reverse

Name: yqfA [C]

Synonym: Neut_0487

Alternate gene names: 114330506

Gene position: 503608-502949 (Counterclockwise)

Preceding gene: 114330507

Following gene: 114330503

Centisome position: 18.93

GC content: 49.7

Gene sequence:

>660_bases
GTGAGCATATTGCTCGCAGTACCCGAACGTGAGCAATCTCTGGGAGAAGAGATCGCGAACAGCATCAGCCACGGTATAGG
ACTGGTCGCAGCACTGATAGCAACCCCATTTCTTATTATGCGTGCGGTGCAGTACGCAGATACAGGCTTTATCATTGGTG
CGAGTTTTTTTGCAGCAACGATGATCCTGCTGTATCTCGCTTCTACCCTCTATCATGCTTTGCCGCAAGGCAAGGCTAAG
CGTGTATTTAAGATTATCGAACATTCTGCGATCTATCTCCTCATCGCTGGTACCTACACGCCGTTCACGCTGGGTGTGCT
TCGTGGTCCATGGGGATGGACACTCTTTGGGATCGTCTGGGGGCTCGCCGCAATCGGAGTAACATTGAAAGCATTCGATA
AGATGCACAACCCCATTATCACCACCAGTCTTTATCTGCTTATGGGGTGGCTCATTCTCATCGCAATTTACCCGTTGTAC
ACCCGCATACCTGTATCCGGCTTACTATGGTTGATTGCAGGAGGGGTGACTTATACGATCGGCGTATTCTTTTTTGCGAC
CGACTCACGTTTTCGATACGGTCACTTCATCTGGCATTTGTTTGTAATGGTGGGTACTGTCTGCCACTACTTTGCAGTCC
TCTGGTATGCAGCTCCCTAG

Upstream 100 bases:

>100_bases
TCCTGGAAGCAGTGTCGTTCGTCCATCAAGTCGTTTTCCAGTGTCGTTCGTCCATCAAGTCGTTTTCTTCACCTATATAA
ACTACGTAGGTTGAAACATC

Downstream 100 bases:

>100_bases
CAGTATGGTTTTTCCAGATAGAGCTTCCCACCAGGCCTAATTTTTCCTGGTATCGATTCATTCCCACATTACGTTACAAC
CTGCCTTTGCTGCGGCAGTC

Product: channel protein, hemolysin III family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MSILLAVPEREQSLGEEIANSISHGIGLVAALIATPFLIMRAVQYADTGFIIGASFFAATMILLYLASTLYHALPQGKAK
RVFKIIEHSAIYLLIAGTYTPFTLGVLRGPWGWTLFGIVWGLAAIGVTLKAFDKMHNPIITTSLYLLMGWLILIAIYPLY
TRIPVSGLLWLIAGGVTYTIGVFFFATDSRFRYGHFIWHLFVMVGTVCHYFAVLWYAAP

Sequences:

>Translated_219_residues
MSILLAVPEREQSLGEEIANSISHGIGLVAALIATPFLIMRAVQYADTGFIIGASFFAATMILLYLASTLYHALPQGKAK
RVFKIIEHSAIYLLIAGTYTPFTLGVLRGPWGWTLFGIVWGLAAIGVTLKAFDKMHNPIITTSLYLLMGWLILIAIYPLY
TRIPVSGLLWLIAGGVTYTIGVFFFATDSRFRYGHFIWHLFVMVGTVCHYFAVLWYAAP
>Mature_218_residues
SILLAVPEREQSLGEEIANSISHGIGLVAALIATPFLIMRAVQYADTGFIIGASFFAATMILLYLASTLYHALPQGKAKR
VFKIIEHSAIYLLIAGTYTPFTLGVLRGPWGWTLFGIVWGLAAIGVTLKAFDKMHNPIITTSLYLLMGWLILIAIYPLYT
RIPVSGLLWLIAGGVTYTIGVFFFATDSRFRYGHFIWHLFVMVGTVCHYFAVLWYAAP

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=206, Percent_Identity=27.1844660194175, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI52630445, Length=206, Percent_Identity=26.2135922330097, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI1789266, Length=209, Percent_Identity=44.0191387559809, Blast_Score=162, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI71996356, Length=211, Percent_Identity=31.7535545023697, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24640324, Length=223, Percent_Identity=28.2511210762332, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 24270; Mature: 24139

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILLAVPEREQSLGEEIANSISHGIGLVAALIATPFLIMRAVQYADTGFIIGASFFAAT
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MILLYLASTLYHALPQGKAKRVFKIIEHSAIYLLIAGTYTPFTLGVLRGPWGWTLFGIVW
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHH
GLAAIGVTLKAFDKMHNPIITTSLYLLMGWLILIAIYPLYTRIPVSGLLWLIAGGVTYTI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHH
GVFFFATDSRFRYGHFIWHLFVMVGTVCHYFAVLWYAAP
HHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SILLAVPEREQSLGEEIANSISHGIGLVAALIATPFLIMRAVQYADTGFIIGASFFAAT
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MILLYLASTLYHALPQGKAKRVFKIIEHSAIYLLIAGTYTPFTLGVLRGPWGWTLFGIVW
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHH
GLAAIGVTLKAFDKMHNPIITTSLYLLMGWLILIAIYPLYTRIPVSGLLWLIAGGVTYTI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHH
GVFFFATDSRFRYGHFIWHLFVMVGTVCHYFAVLWYAAP
HHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]