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The map label for this gene is cspA [H]

Identifier: 114330329

GI number: 114330329

Start: 310522

End: 310725

Strand: Direct

Name: cspA [H]

Synonym: Neut_0302

Alternate gene names: 114330329

Gene position: 310522-310725 (Clockwise)

Preceding gene: 114330327

Following gene: 114330333

Centisome position: 11.67

GC content: 38.73

Gene sequence:

>204_bases
ATGACGACAGGTATAGTTAAATGGTTTAATGATGCAAAAGGTTTTGGGTTTATTACCCCTGATGATGGTAGCGAGGATTT
ATTCGCGCATTTTTCTGCAATCAGCATGAATGGATTTAAGACTCTGAGAGAAGGTCAAAGAGTTTCTTTTGATGTGACAC
AAGGTCAAAAGGGTAAACAAGCATCCAATATTCAAGCTCCCTGA

Upstream 100 bases:

>100_bases
CTTTTGCAGTTATTGGTGTTCCTGTTGGTATTCCATGTGCAATCTTAGATTCAAATAGCTCTACGGAAGCCTTTCCGTTT
TTTGACAAAGGAGTATTCAC

Downstream 100 bases:

>100_bases
TTAAGACTTGATCTGATAAAAAGCCCAGCCCTTAAGAAGCTGGGCTTTTTGCTGTTTACCCTACATTCCCCACCTTTCCA
TTCCCTTCCTTGCCATCTGT

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MTTGIVKWFNDAKGFGFITPDDGSEDLFAHFSAISMNGFKTLREGQRVSFDVTQGQKGKQASNIQAP

Sequences:

>Translated_67_residues
MTTGIVKWFNDAKGFGFITPDDGSEDLFAHFSAISMNGFKTLREGQRVSFDVTQGQKGKQASNIQAP
>Mature_66_residues
TTGIVKWFNDAKGFGFITPDDGSEDLFAHFSAISMNGFKTLREGQRVSFDVTQGQKGKQASNIQAP

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586884, Length=68, Percent_Identity=42.6470588235294, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI224586882, Length=68, Percent_Identity=42.6470588235294, Blast_Score=63, Evalue=4e-11,
Organism=Homo sapiens, GI156415990, Length=68, Percent_Identity=42.6470588235294, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI34098946, Length=68, Percent_Identity=42.6470588235294, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=68.2539682539683, Blast_Score=95, Evalue=7e-22,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=62.5, Blast_Score=90, Evalue=3e-20,
Organism=Escherichia coli, GI2367114, Length=62, Percent_Identity=62.9032258064516, Blast_Score=89, Evalue=4e-20,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=64.0625, Blast_Score=89, Evalue=4e-20,
Organism=Escherichia coli, GI1788126, Length=63, Percent_Identity=66.6666666666667, Blast_Score=89, Evalue=4e-20,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=60.9375, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=58.0645161290323, Blast_Score=81, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71983225, Length=56, Percent_Identity=48.2142857142857, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71983217, Length=56, Percent_Identity=48.2142857142857, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=44.2622950819672, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24663131, Length=69, Percent_Identity=44.9275362318841, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7327; Mature: 7196

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTGIVKWFNDAKGFGFITPDDGSEDLFAHFSAISMNGFKTLREGQRVSFDVTQGQKGKQ
CCCCCEEECCCCCCCEEECCCCCCHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCCCCCC
ASNIQAP
CCCCCCC
>Mature Secondary Structure 
TTGIVKWFNDAKGFGFITPDDGSEDLFAHFSAISMNGFKTLREGQRVSFDVTQGQKGKQ
CCCCEEECCCCCCCEEECCCCCCHHHHHHHHHHCCCCHHHHCCCCEEEEECCCCCCCCC
ASNIQAP
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA