Click here to switch to the map view.

The map label for this gene is ycdQ [C]

Identifier: 114330285

GI number: 114330285

Start: 271510

End: 272301

Strand: Reverse

Name: ycdQ [C]

Synonym: Neut_0258

Alternate gene names: 114330285

Gene position: 272301-271510 (Counterclockwise)

Preceding gene: 114330292

Following gene: 114330283

Centisome position: 10.23

GC content: 47.85

Gene sequence:

>792_bases
GTGATTTACGATGAACGCTCGGTAATGGCAGAAATTACTGAATTTTTTATTATTGAAATAGGTTATATGCGCATTTCTTT
TATCATTCCAGCTTTCAATGAAGAGCAATTGATCGAGCAGTGCCTGCGTTCAGTTGCCGATGCAGTGATGGCGAATCGCT
CCTATGGCTATACCCATGAAGTCATCGTAGTGAATAACAATTCTACTGATGCAACTGCTCGTTTAGCTAAACGAGCAGGT
GCCCGGGTGGTTTTTGAGCCGATCAATCATATTGCGCGTGCCAGAACTGCTGGCGCAGATGTTGCCAAGGGGGAATGGCT
GATATTTATGGATGCCGATTGCCTTATGAATGCCGGACTGGTAGGCGATATGTTTGAATTGATCAAACAAGGCAGGCATG
TCGGTGCGGGCAGCACGCTTTATATGCCGGATCAGCCCAGATGGGCGGAGATATTGCTGCGAATATGGACGCTGCTGTCA
GTGCAGCTTGGCTGGGCTGCTGGGGCGCTGATAGTATGCAATGCCATCGCATTCAAAGAGGTAGGCGGGTTTGATTTGAC
ACTGTACGCGGCGGAAGAAATCGAATTGAGCCGGAAACTCAAGAAATATGGCCGCCAGCACAAGCTCAAGTTTGCAATTT
TGAGCAAACACCCGCTCGAAACATCCTCCAGAAAAACCAAGCTTTACAGTGGATGGGAGATTACCAGGCAGTTTTTTTAC
CTGGTATTGTCTCCCTTGGGCTCATTGCGTAATAAAAAGAAGCTGCCGATGTGGTACGACGGTAGACGCTGA

Upstream 100 bases:

>100_bases
AGCTGTTTAAAATTGGAAGATGTAATTATAAATGCAGGCTTCTGGGCATATCTATCCTTACCCGAATTTTATATTGTAAG
CTGAACAAGGTTGTAATTCT

Downstream 100 bases:

>100_bases
CCGGGAAAATACCGGTTACTCCACTACGCTGTTAATTCAGGCTGTGTCACTCCGGCGAAAGCCGGAATCTGGAAAAGTCA
GTCCGCCGGATGACGGATTT

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: Glycosyltransferase; Glycosyl Transferase Group 2 Family Protein; Cell Wall Biogenesis Glycosyltransferase; Teichoic Acid Biosynthesis Related Protein; Family 2 Glycosyl Transferase; Glycosyl Transferase

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MIYDERSVMAEITEFFIIEIGYMRISFIIPAFNEEQLIEQCLRSVADAVMANRSYGYTHEVIVVNNNSTDATARLAKRAG
ARVVFEPINHIARARTAGADVAKGEWLIFMDADCLMNAGLVGDMFELIKQGRHVGAGSTLYMPDQPRWAEILLRIWTLLS
VQLGWAAGALIVCNAIAFKEVGGFDLTLYAAEEIELSRKLKKYGRQHKLKFAILSKHPLETSSRKTKLYSGWEITRQFFY
LVLSPLGSLRNKKKLPMWYDGRR

Sequences:

>Translated_263_residues
MIYDERSVMAEITEFFIIEIGYMRISFIIPAFNEEQLIEQCLRSVADAVMANRSYGYTHEVIVVNNNSTDATARLAKRAG
ARVVFEPINHIARARTAGADVAKGEWLIFMDADCLMNAGLVGDMFELIKQGRHVGAGSTLYMPDQPRWAEILLRIWTLLS
VQLGWAAGALIVCNAIAFKEVGGFDLTLYAAEEIELSRKLKKYGRQHKLKFAILSKHPLETSSRKTKLYSGWEITRQFFY
LVLSPLGSLRNKKKLPMWYDGRR
>Mature_263_residues
MIYDERSVMAEITEFFIIEIGYMRISFIIPAFNEEQLIEQCLRSVADAVMANRSYGYTHEVIVVNNNSTDATARLAKRAG
ARVVFEPINHIARARTAGADVAKGEWLIFMDADCLMNAGLVGDMFELIKQGRHVGAGSTLYMPDQPRWAEILLRIWTLLS
VQLGWAAGALIVCNAIAFKEVGGFDLTLYAAEEIELSRKLKKYGRQHKLKFAILSKHPLETSSRKTKLYSGWEITRQFFY
LVLSPLGSLRNKKKLPMWYDGRR

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29874; Mature: 29874

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYDERSVMAEITEFFIIEIGYMRISFIIPAFNEEQLIEQCLRSVADAVMANRSYGYTHE
CCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
VIVVNNNSTDATARLAKRAGARVVFEPINHIARARTAGADVAKGEWLIFMDADCLMNAGL
EEEEECCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHCCCC
VGDMFELIKQGRHVGAGSTLYMPDQPRWAEILLRIWTLLSVQLGWAAGALIVCNAIAFKE
HHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGFDLTLYAAEEIELSRKLKKYGRQHKLKFAILSKHPLETSSRKTKLYSGWEITRQFFY
CCCCEEEEEEHHHHHHHHHHHHHCHHHEEEEEEECCCCCCCCCCCCEEECCHHHHHHHHH
LVLSPLGSLRNKKKLPMWYDGRR
HHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MIYDERSVMAEITEFFIIEIGYMRISFIIPAFNEEQLIEQCLRSVADAVMANRSYGYTHE
CCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
VIVVNNNSTDATARLAKRAGARVVFEPINHIARARTAGADVAKGEWLIFMDADCLMNAGL
EEEEECCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHCCCC
VGDMFELIKQGRHVGAGSTLYMPDQPRWAEILLRIWTLLSVQLGWAAGALIVCNAIAFKE
HHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGFDLTLYAAEEIELSRKLKKYGRQHKLKFAILSKHPLETSSRKTKLYSGWEITRQFFY
CCCCEEEEEEHHHHHHHHHHHHHCHHHEEEEEEECCCCCCCCCCCCEEECCHHHHHHHHH
LVLSPLGSLRNKKKLPMWYDGRR
HHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA