| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
Click here to switch to the map view.
The map label for this gene is 113969845
Identifier: 113969845
GI number: 113969845
Start: 1765117
End: 1765566
Strand: Direct
Name: 113969845
Synonym: Shewmr4_1503
Alternate gene names: NA
Gene position: 1765117-1765566 (Clockwise)
Preceding gene: 113969844
Following gene: 113969848
Centisome position: 37.51
GC content: 49.56
Gene sequence:
>450_bases ATGACGCTTCTTCATCCTGATTCGGATATTCCGTTTCATCCCAACCCTGGCTGGTTTCTTGGCGCTTTTAATTGTTATGA CCGCGAGGAAACGCTCGGGGAAACACTCAATCGCTACGATCCTTTAGATCCCGCGCAGCTGCAAGCACTGTACGATGCTT ATGTATTTGATGAGTTTGGTGAACAGTTGGGATTTACTTCTGCCCACAGGGCTGCAATGGCGACAAATTTAATCGCTGCG CTGAGTGAGACAAACCATGATTTTACCGTCTATTTAGCGATTGATGAGAGCGAGGAGGAATGGTGTTTTCCTTCAGCGTG GGCATTCCCTAAGCCACGCTATCCCTTTGAGCAGGCGTATCTTGCGCTGCTGCGACATTGGGGAGTGGAGCTCACTGCAA TAGGCATTGCGCTTCCCAGCCCAAGCTTATTGGGTATCCATGAGTCTTAG
Upstream 100 bases:
>100_bases CGGTACCTTAGCCGAAAATACCTTTACTCAGGCAAGACAGTTAGCTGCCTAAAAACGCTTTTTCTTTAAAGCCTCAGTAG CAATACGAGAACCTGTCACC
Downstream 100 bases:
>100_bases TTAGCATTCCGATTTAAGCCCACAAGCCTTGCTGTGGGCTTTATGTAAACCTTTCAGCCTAGAGCAACCAGGCGTAGCTT AGCTTCATAAAATAGGTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MTLLHPDSDIPFHPNPGWFLGAFNCYDREETLGETLNRYDPLDPAQLQALYDAYVFDEFGEQLGFTSAHRAAMATNLIAA LSETNHDFTVYLAIDESEEEWCFPSAWAFPKPRYPFEQAYLALLRHWGVELTAIGIALPSPSLLGIHES
Sequences:
>Translated_149_residues MTLLHPDSDIPFHPNPGWFLGAFNCYDREETLGETLNRYDPLDPAQLQALYDAYVFDEFGEQLGFTSAHRAAMATNLIAA LSETNHDFTVYLAIDESEEEWCFPSAWAFPKPRYPFEQAYLALLRHWGVELTAIGIALPSPSLLGIHES >Mature_148_residues TLLHPDSDIPFHPNPGWFLGAFNCYDREETLGETLNRYDPLDPAQLQALYDAYVFDEFGEQLGFTSAHRAAMATNLIAAL SETNHDFTVYLAIDESEEEWCFPSAWAFPKPRYPFEQAYLALLRHWGVELTAIGIALPSPSLLGIHES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16837; Mature: 16706
Theoretical pI: Translated: 4.12; Mature: 4.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLLHPDSDIPFHPNPGWFLGAFNCYDREETLGETLNRYDPLDPAQLQALYDAYVFDEFG CCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH EQLGFTSAHRAAMATNLIAALSETNHDFTVYLAIDESEEEWCFPSAWAFPKPRYPFEQAY HHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHH LALLRHWGVELTAIGIALPSPSLLGIHES HHHHHHCCCEEEEEEEECCCCCEECCCCC >Mature Secondary Structure TLLHPDSDIPFHPNPGWFLGAFNCYDREETLGETLNRYDPLDPAQLQALYDAYVFDEFG CCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH EQLGFTSAHRAAMATNLIAALSETNHDFTVYLAIDESEEEWCFPSAWAFPKPRYPFEQAY HHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHH LALLRHWGVELTAIGIALPSPSLLGIHES HHHHHHCCCEEEEEEEECCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA