| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113969811
Identifier: 113969811
GI number: 113969811
Start: 1717553
End: 1720036
Strand: Direct
Name: 113969811
Synonym: Shewmr4_1469
Alternate gene names: NA
Gene position: 1717553-1720036 (Clockwise)
Preceding gene: 113969809
Following gene: 113969812
Centisome position: 36.49
GC content: 50.2
Gene sequence:
>2484_bases ATGAAAAGACTCATTTTGTGTGTTGCGATTGCATCAGCACTGGGCCTCACAGGATGTGGAGAGGACAGTTATAACGAACT CAAGGATAAGACAGACCCGCTCATCCCTGAATCCCATATGGTGTTTGACCCCGCGAATGCTAAAGTGCCTTTGCCTAATG ATTTGTTGTTTAGCGGCACTACAGACGGCACCTTATCAATCCCGGGGGAAAGTTCGGGGAACTATGTCGATCCGCAAATT GCTCTTGGTGCCTTAGATGGATGGTCAACTACATCTCCCATTTCAATCGATCTCGAACTCGCTAAAGATCACGATGGCAC ACAACTGACCCTGATGGCCGCATCGGTTGCCCAACCGGGCGCAGTGAGAATGTTTGAGGCCACAGTGGGTGGTCCATTGT CATCTGATCCTGAATGTACCACTAAACCGTCAGTATCTGCCTGTAAAGTCGGCGATGAATTGCAATTTGGTGTGGATTTT GTGTCGATGGCATCGGGTAACAAAGTCGTTATCGTGCCACTCAAACCGCTAAAAGCCGGCCAGTCTTATATTTATGCGAC AACCAAGTTAATCCAAGATTCAGAGGAACGAGGCATTGCCCCTTCAACGACCTATGGTACGTTGAAGATGGACATCAACA CCTTACCCCTAGAAACGCCTGATCAATTGATGCTGCAAACCTTGATCAACAGTTATGAAAAGGGCATGGCTGCGGCACAT AATGTTGATACCTCAACCATTACCTATTCAGGCTTGTTTACCACTCAATCGGTAGCAAACGTCTATGAAACCACAAAACT CTTGATGGCGCAGGGCGCGCCTTATGCCCCAAGTTTTGCGCAAATGCCCACCCCTGCGGGTTACACTGTGGCTCAGGCTG CTGGTTTAACTCCAGCAGATGGCGCGGCGTATGTAGTATCGAATCTAGCCGATGTTTATACCGCTAAGATTAAATTGCCG ATTTACGGTGACTGTTCTTCGGTCAGTTGCTTGTCATCTGCAGGTCAGCCGCTGATCAATGGCCGCTGGAAAGCCCAAGG TGATAGCCCTGTTTCGGTATTATTAGCGCTGCAAGCGGGTACCTTAAGTCAAACCAACTTTGGTATGCAGGCAGTAGCGA ATGGGATTGCAAATCCTGCCGATGCCTTAGCGAATCCTTCTCTGATGGCGGGTAAAACCTGGTTGCTCGATGATGGAACG GCAGCGGATAAAACCAAGCATTTAACCAAATTTAACCCCATCCCTGCGATTAAAGGTTATGAAACGGTACCTGTACTGAT TTCTATGCCAAATGCGACTAAACTCGCGGCCTTCTATCAGCAACAAGGGTTAACCTTTACCCCACCGACTTCTGGCTGGC CAACGACGATTGCGCTACATGGTTTAGGCGGCGGTAAGGAAATGTCATTAGCCTATGCGGGCAGTTATGCAGCTATGGGC GTGGCAACGGTAGCCATCGATATGCCTTTACATGGTGCTCGCTCGTTCGATGCCAATGGCGATGGGGTTTACGAAGTATC GGCAACCGATCCTTCCTTCGGTAACGTGATTGGTACGCCTGATGCCTTTAAAAATGGTAATCCACTCGTCTTCGTGAATA TCTCAAGCACGCTATCGGTGCGGGATAACTTCCGTCAGGCCACCATGGATCACCTTGGCGTGCGTTTAGCCTTAACGGGG TTAGCGCAGGGGCTTGCACAGGCTAATCAACCACAAGTATTCGATATTTCCAAGATTAGCGCGCAGGGCTTAAGTTTAGG TGCGATTGTCGGTACCGACTTTGCGACTTATGCCAGCACGGGCATGAAAAATCCAAGCACGGGTGAAGCGCTACCTAACC CTTATGCCATCAATGCGGTCTCTCTGGCGGCGCCAGCGGGTGGTTTAGCGGGCGCGTTTGCTGGTTCTGCGACCTTTGGC CCAGTGCTGTTTAGCAATGTGACTGCTTCTGCAACGTTCCAAGCATTAGTGGATAAAGCCAATACTGCGGGATACGAGCC TGGCAGCCCAGAATATGCGGCATTAGTACAAGGGGTTTATGCGCAGTTTATTCCAACCTTTGCCTTTGCGGTGCAAACGG CGGTGGATTCAGCGGATCCGGTTAACCATGCAGGTATGTTAAAAGCAACGGGATTACCCGTGCACTTAATCGAAATCGCG GGTGATGGTAACGGTAACTTAGCTGACCAAGTGTTACCTAATCGCGTCGATAACTTCCCACTCTCAGGCACTGAGCCGTT GATCTCGGCAATCGGTCTGCCTTGTGTGGATGCAACCACCAAAGGTTCTGGTGCGGTGCGTTTTGCTAAGGGGCACCATA GCTCAATTGTTGACCCAAGTGAGAAGAGTTCAACGGATGGTATGGCCGCTGCGGCAACCGTTGAGATGCAGACGCAAGTG GCGACCTATGCTTCTACCGCAGGTAAAGGTGAAGCGACGATTTTCGTCACCGATCCAAGCGTGATTTCGACCTGTTCTAA CTAG
Upstream 100 bases:
>100_bases TTAGGGGCTAACATAAGCCCTATTAGTCATAGCTTTTGCGCTATTGTGACTAATTTCTTGGGGAAAACAAAACTATTACA ACAAGATTTGGGGAAAAAAA
Downstream 100 bases:
>100_bases TCGCGTGTAAAATCCTAAAAACCCAGCCTTTGCTGGGTTTTTTTATGGCGCTTTAGGCTGTTAGAATAGCGCGCACTAAA CCGAATCACCTTAGGCCCCA
Product: hypothetical protein
Products: NA
Alternate protein names: Extracellular Lipase; MECDP-Synthase; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase Superfamily Protein; Extracellular Lipase Pla-1/Cef Family; Lipoprotein
Number of amino acids: Translated: 827; Mature: 827
Protein sequence:
>827_residues MKRLILCVAIASALGLTGCGEDSYNELKDKTDPLIPESHMVFDPANAKVPLPNDLLFSGTTDGTLSIPGESSGNYVDPQI ALGALDGWSTTSPISIDLELAKDHDGTQLTLMAASVAQPGAVRMFEATVGGPLSSDPECTTKPSVSACKVGDELQFGVDF VSMASGNKVVIVPLKPLKAGQSYIYATTKLIQDSEERGIAPSTTYGTLKMDINTLPLETPDQLMLQTLINSYEKGMAAAH NVDTSTITYSGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPAGYTVAQAAGLTPADGAAYVVSNLADVYTAKIKLP IYGDCSSVSCLSSAGQPLINGRWKAQGDSPVSVLLALQAGTLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDGT AADKTKHLTKFNPIPAIKGYETVPVLISMPNATKLAAFYQQQGLTFTPPTSGWPTTIALHGLGGGKEMSLAYAGSYAAMG VATVAIDMPLHGARSFDANGDGVYEVSATDPSFGNVIGTPDAFKNGNPLVFVNISSTLSVRDNFRQATMDHLGVRLALTG LAQGLAQANQPQVFDISKISAQGLSLGAIVGTDFATYASTGMKNPSTGEALPNPYAINAVSLAAPAGGLAGAFAGSATFG PVLFSNVTASATFQALVDKANTAGYEPGSPEYAALVQGVYAQFIPTFAFAVQTAVDSADPVNHAGMLKATGLPVHLIEIA GDGNGNLADQVLPNRVDNFPLSGTEPLISAIGLPCVDATTKGSGAVRFAKGHHSSIVDPSEKSSTDGMAAAATVEMQTQV ATYASTAGKGEATIFVTDPSVISTCSN
Sequences:
>Translated_827_residues MKRLILCVAIASALGLTGCGEDSYNELKDKTDPLIPESHMVFDPANAKVPLPNDLLFSGTTDGTLSIPGESSGNYVDPQI ALGALDGWSTTSPISIDLELAKDHDGTQLTLMAASVAQPGAVRMFEATVGGPLSSDPECTTKPSVSACKVGDELQFGVDF VSMASGNKVVIVPLKPLKAGQSYIYATTKLIQDSEERGIAPSTTYGTLKMDINTLPLETPDQLMLQTLINSYEKGMAAAH NVDTSTITYSGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPAGYTVAQAAGLTPADGAAYVVSNLADVYTAKIKLP IYGDCSSVSCLSSAGQPLINGRWKAQGDSPVSVLLALQAGTLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDGT AADKTKHLTKFNPIPAIKGYETVPVLISMPNATKLAAFYQQQGLTFTPPTSGWPTTIALHGLGGGKEMSLAYAGSYAAMG VATVAIDMPLHGARSFDANGDGVYEVSATDPSFGNVIGTPDAFKNGNPLVFVNISSTLSVRDNFRQATMDHLGVRLALTG LAQGLAQANQPQVFDISKISAQGLSLGAIVGTDFATYASTGMKNPSTGEALPNPYAINAVSLAAPAGGLAGAFAGSATFG PVLFSNVTASATFQALVDKANTAGYEPGSPEYAALVQGVYAQFIPTFAFAVQTAVDSADPVNHAGMLKATGLPVHLIEIA GDGNGNLADQVLPNRVDNFPLSGTEPLISAIGLPCVDATTKGSGAVRFAKGHHSSIVDPSEKSSTDGMAAAATVEMQTQV ATYASTAGKGEATIFVTDPSVISTCSN >Mature_827_residues MKRLILCVAIASALGLTGCGEDSYNELKDKTDPLIPESHMVFDPANAKVPLPNDLLFSGTTDGTLSIPGESSGNYVDPQI ALGALDGWSTTSPISIDLELAKDHDGTQLTLMAASVAQPGAVRMFEATVGGPLSSDPECTTKPSVSACKVGDELQFGVDF VSMASGNKVVIVPLKPLKAGQSYIYATTKLIQDSEERGIAPSTTYGTLKMDINTLPLETPDQLMLQTLINSYEKGMAAAH NVDTSTITYSGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPAGYTVAQAAGLTPADGAAYVVSNLADVYTAKIKLP IYGDCSSVSCLSSAGQPLINGRWKAQGDSPVSVLLALQAGTLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDGT AADKTKHLTKFNPIPAIKGYETVPVLISMPNATKLAAFYQQQGLTFTPPTSGWPTTIALHGLGGGKEMSLAYAGSYAAMG VATVAIDMPLHGARSFDANGDGVYEVSATDPSFGNVIGTPDAFKNGNPLVFVNISSTLSVRDNFRQATMDHLGVRLALTG LAQGLAQANQPQVFDISKISAQGLSLGAIVGTDFATYASTGMKNPSTGEALPNPYAINAVSLAAPAGGLAGAFAGSATFG PVLFSNVTASATFQALVDKANTAGYEPGSPEYAALVQGVYAQFIPTFAFAVQTAVDSADPVNHAGMLKATGLPVHLIEIA GDGNGNLADQVLPNRVDNFPLSGTEPLISAIGLPCVDATTKGSGAVRFAKGHHSSIVDPSEKSSTDGMAAAATVEMQTQV ATYASTAGKGEATIFVTDPSVISTCSN
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85203; Mature: 85203
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLILCVAIASALGLTGCGEDSYNELKDKTDPLIPESHMVFDPANAKVPLPNDLLFSGT CCCEEEHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEEEECC TDGTLSIPGESSGNYVDPQIALGALDGWSTTSPISIDLELAKDHDGTQLTLMAASVAQPG CCCEEECCCCCCCCEECCEEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCC AVRMFEATVGGPLSSDPECTTKPSVSACKVGDELQFGVDFVSMASGNKVVIVPLKPLKAG CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEECCCCEEEEEECCCCCCC QSYIYATTKLIQDSEERGIAPSTTYGTLKMDINTLPLETPDQLMLQTLINSYEKGMAAAH CEEEEEEHHHHHCCHHCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC NVDTSTITYSGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPAGYTVAQAAGLTPAD CCCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHCCCCCCC GAAYVVSNLADVYTAKIKLPIYGDCSSVSCLSSAGQPLINGRWKAQGDSPVSVLLALQAG CHHHHHHHHHHHEEEEEEEEEECCCCCHHHHHHCCCCCCCCEEECCCCCCEEEEEEEECC TLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDGTAADKTKHLTKFNPIPAIKGY CCCCCCCCHHHHHHHCCCHHHHHCCCCEECCCEEEECCCCCCCHHHHHHCCCCCCCCCCC ETVPVLISMPNATKLAAFYQQQGLTFTPPTSGWPTTIALHGLGGGKEMSLAYAGSYAAMG CCEEEEEECCCCHHHHHHHHHCCCEECCCCCCCCCEEEEEECCCCCEEEEEECCCHHHHE VATVAIDMPLHGARSFDANGDGVYEVSATDPSFGNVIGTPDAFKNGNPLVFVNISSTLSV EEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEH RDNFRQATMDHLGVRLALTGLAQGLAQANQPQVFDISKISAQGLSLGAIVGTDFATYAST HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCCEEEEEECCCHHHHHHC GMKNPSTGEALPNPYAINAVSLAAPAGGLAGAFAGSATFGPVLFSNVTASATFQALVDKA CCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHH NTAGYEPGSPEYAALVQGVYAQFIPTFAFAVQTAVDSADPVNHAGMLKATGLPVHLIEIA HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEE GDGNGNLADQVLPNRVDNFPLSGTEPLISAIGLPCVDATTKGSGAVRFAKGHHSSIVDPS ECCCCCCHHHHCCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCC EKSSTDGMAAAATVEMQTQVATYASTAGKGEATIFVTDPSVISTCSN CCCCCCCCEEEEEEEHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCC >Mature Secondary Structure MKRLILCVAIASALGLTGCGEDSYNELKDKTDPLIPESHMVFDPANAKVPLPNDLLFSGT CCCEEEHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCEEEECC TDGTLSIPGESSGNYVDPQIALGALDGWSTTSPISIDLELAKDHDGTQLTLMAASVAQPG CCCEEECCCCCCCCEECCEEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCC AVRMFEATVGGPLSSDPECTTKPSVSACKVGDELQFGVDFVSMASGNKVVIVPLKPLKAG CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEECCCCEEEEEECCCCCCC QSYIYATTKLIQDSEERGIAPSTTYGTLKMDINTLPLETPDQLMLQTLINSYEKGMAAAH CEEEEEEHHHHHCCHHCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC NVDTSTITYSGLFTTQSVANVYETTKLLMAQGAPYAPSFAQMPTPAGYTVAQAAGLTPAD CCCCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHCCCCCCC GAAYVVSNLADVYTAKIKLPIYGDCSSVSCLSSAGQPLINGRWKAQGDSPVSVLLALQAG CHHHHHHHHHHHEEEEEEEEEECCCCCHHHHHHCCCCCCCCEEECCCCCCEEEEEEEECC TLSQTNFGMQAVANGIANPADALANPSLMAGKTWLLDDGTAADKTKHLTKFNPIPAIKGY CCCCCCCCHHHHHHHCCCHHHHHCCCCEECCCEEEECCCCCCCHHHHHHCCCCCCCCCCC ETVPVLISMPNATKLAAFYQQQGLTFTPPTSGWPTTIALHGLGGGKEMSLAYAGSYAAMG CCEEEEEECCCCHHHHHHHHHCCCEECCCCCCCCCEEEEEECCCCCEEEEEECCCHHHHE VATVAIDMPLHGARSFDANGDGVYEVSATDPSFGNVIGTPDAFKNGNPLVFVNISSTLSV EEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEH RDNFRQATMDHLGVRLALTGLAQGLAQANQPQVFDISKISAQGLSLGAIVGTDFATYAST HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCCCCCEEEEEECCCHHHHHHC GMKNPSTGEALPNPYAINAVSLAAPAGGLAGAFAGSATFGPVLFSNVTASATFQALVDKA CCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHH NTAGYEPGSPEYAALVQGVYAQFIPTFAFAVQTAVDSADPVNHAGMLKATGLPVHLIEIA HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEE GDGNGNLADQVLPNRVDNFPLSGTEPLISAIGLPCVDATTKGSGAVRFAKGHHSSIVDPS ECCCCCCHHHHCCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCC EKSSTDGMAAAATVEMQTQVATYASTAGKGEATIFVTDPSVISTCSN CCCCCCCCEEEEEEEHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA