| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is fliD [H]
Identifier: 113969618
GI number: 113969618
Start: 1482264
End: 1483631
Strand: Direct
Name: fliD [H]
Synonym: Shewmr4_1275
Alternate gene names: 113969618
Gene position: 1482264-1483631 (Clockwise)
Preceding gene: 113969617
Following gene: 113969619
Centisome position: 31.5
GC content: 42.76
Gene sequence:
>1368_bases ATGGGCTTAACATCGGTTGGTATTGGTTCTGGCATGGATATCGGTGGCATAGTCACAGCGTTAGTGAATGCTGAAAGTGC CGGTAAAATTGCTAAGTTTGATGTCAATGAAGGTAAGCTTAATGCGCAAATTTCGGGTATTGGCGCATTAAAAAGTGCCA TGTCTGAATTTAACGATAAATTAAAAACGCTCGCTAAGGCCGAAACCTTTGGTAGTCAAAAGGTTGTGACTTCCTCAAAA GATTATCTCTCTGCCACTGTAGATAAAACCGCGGTTTCTGGCACTTATCAAATTAAAGTCGAGCAATTGGCTCAAAGCCA GAAAGTCGGCACAGCTGTAGCTACAGATACAACCTCACCGATAGGTGAAGGAGCTTTATCCATTAAGGTGGGAAGTGGAA CAGCTTTTAATATTGATGTCTCCGCTACTGACTCCCTAACCGATATTATGAATAAGATTAATAAATCTGATGATAATACC GATGTTACTGCCACCATAGTAAATGGGGAGCTGGGGCCTCAGCTGGTGTTAGGTTCCAAGAAGACTGGTGAGGATAACCA GATTTCAGTAACTGCAACGGATAGCGGAGCGGGTACTGGTTTGTCAGATACCTTTACGATGAGTGAAGTCACGCCCGCCA AAAACGCAATAGTGTATGTCGATGGCGTAAAGGTGGTTTCAGACTCCAATACACTTGATAAGGCCATTACTGGCGTTTCA TTAACCTTAACCGCCGCCGATGTAGATAAAACGACAACAATGACCGTGAGTAAAGATACGGCGAAAACGAAAACTGCGAT AGAGGGGTTTGTTGAGTCCTATAACAGTTTGATGACCACAATTCAGAACCTCACTAAATATGATGCCGATACAAAGCAGG CTGGGATATTACAAGGTGATGCCTTACCCCGTAGCATTCAGAGCCAATTACGTACTATGGTTTCAAGCGAGTTTGATACT TCAGACGGAAAACAGGTGCTCGCAAATTTAGGGATAAAAACGACTCGTGAAGGATTGTTGGAAATTGATTCGACTAAATT AACTGAGTCATTGAAAAATGACAAGGGGACAATTAGCGAGTTATTTACCTCTGAGAATACGGGACTTTCGGCGAAAATGT CTGGTTTGGTAGATACTTATATAAAATCTGGCGGTATTATCGATGGGCGGGATAATTCCCTTGATGAACAACTCGCCCGT ATTGCCGATAGTCGAGAGCAGCTAAGCACTCGGATGGCCGCTTACAGCGATCGCTTATATAAGCAATTTAATGCTATGGA TTTGGTTGTGGCAAATCTGAACTCTCAATCCAGCATGTTGTTATCACGTTTAGATTCATTGCCTGGTGTTGTTCGACAGA ATAAATAG
Upstream 100 bases:
>100_bases CTCGAAATTGCTAAAAAGTTAAATGAGGTCACTGGACTGTTGATGAAAACAGAGGTGTAGGGTGGCTTGAGTTATGGATT TAAAATAAGTTGAGGTTTTT
Downstream 100 bases:
>100_bases GATAAGACAGAATCTTGGCAGTTCATCCGTTTGTGAATGAGAAGGCAGAGAAATAGCGTGAATAATCTTATTTTGCAAAT AGCAGATGTTAACGATAATC
Product: flagellar hook-associated 2 domain-containing protein
Products: NA
Alternate protein names: HAP2; Filament cap protein [H]
Number of amino acids: Translated: 455; Mature: 454
Protein sequence:
>455_residues MGLTSVGIGSGMDIGGIVTALVNAESAGKIAKFDVNEGKLNAQISGIGALKSAMSEFNDKLKTLAKAETFGSQKVVTSSK DYLSATVDKTAVSGTYQIKVEQLAQSQKVGTAVATDTTSPIGEGALSIKVGSGTAFNIDVSATDSLTDIMNKINKSDDNT DVTATIVNGELGPQLVLGSKKTGEDNQISVTATDSGAGTGLSDTFTMSEVTPAKNAIVYVDGVKVVSDSNTLDKAITGVS LTLTAADVDKTTTMTVSKDTAKTKTAIEGFVESYNSLMTTIQNLTKYDADTKQAGILQGDALPRSIQSQLRTMVSSEFDT SDGKQVLANLGIKTTREGLLEIDSTKLTESLKNDKGTISELFTSENTGLSAKMSGLVDTYIKSGGIIDGRDNSLDEQLAR IADSREQLSTRMAAYSDRLYKQFNAMDLVVANLNSQSSMLLSRLDSLPGVVRQNK
Sequences:
>Translated_455_residues MGLTSVGIGSGMDIGGIVTALVNAESAGKIAKFDVNEGKLNAQISGIGALKSAMSEFNDKLKTLAKAETFGSQKVVTSSK DYLSATVDKTAVSGTYQIKVEQLAQSQKVGTAVATDTTSPIGEGALSIKVGSGTAFNIDVSATDSLTDIMNKINKSDDNT DVTATIVNGELGPQLVLGSKKTGEDNQISVTATDSGAGTGLSDTFTMSEVTPAKNAIVYVDGVKVVSDSNTLDKAITGVS LTLTAADVDKTTTMTVSKDTAKTKTAIEGFVESYNSLMTTIQNLTKYDADTKQAGILQGDALPRSIQSQLRTMVSSEFDT SDGKQVLANLGIKTTREGLLEIDSTKLTESLKNDKGTISELFTSENTGLSAKMSGLVDTYIKSGGIIDGRDNSLDEQLAR IADSREQLSTRMAAYSDRLYKQFNAMDLVVANLNSQSSMLLSRLDSLPGVVRQNK >Mature_454_residues GLTSVGIGSGMDIGGIVTALVNAESAGKIAKFDVNEGKLNAQISGIGALKSAMSEFNDKLKTLAKAETFGSQKVVTSSKD YLSATVDKTAVSGTYQIKVEQLAQSQKVGTAVATDTTSPIGEGALSIKVGSGTAFNIDVSATDSLTDIMNKINKSDDNTD VTATIVNGELGPQLVLGSKKTGEDNQISVTATDSGAGTGLSDTFTMSEVTPAKNAIVYVDGVKVVSDSNTLDKAITGVSL TLTAADVDKTTTMTVSKDTAKTKTAIEGFVESYNSLMTTIQNLTKYDADTKQAGILQGDALPRSIQSQLRTMVSSEFDTS DGKQVLANLGIKTTREGLLEIDSTKLTESLKNDKGTISELFTSENTGLSAKMSGLVDTYIKSGGIIDGRDNSLDEQLARI ADSREQLSTRMAAYSDRLYKQFNAMDLVVANLNSQSSMLLSRLDSLPGVVRQNK
Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the
COG id: COG1345
COG function: function code N; Flagellar capping protein
Gene ontology:
Cell location: Secreted. Bacterial flagellum [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliD family [H]
Homologues:
Organism=Escherichia coli, GI1788233, Length=474, Percent_Identity=32.0675105485232, Blast_Score=150, Evalue=2e-37,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010810 - InterPro: IPR010809 - InterPro: IPR003481 [H]
Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N [H]
EC number: NA
Molecular weight: Translated: 47799; Mature: 47668
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLTSVGIGSGMDIGGIVTALVNAESAGKIAKFDVNEGKLNAQISGIGALKSAMSEFNDK CCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEEHHHHHHHHHHHHHHH LKTLAKAETFGSQKVVTSSKDYLSATVDKTAVSGTYQIKVEQLAQSQKVGTAVATDTTSP HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEECCCCCC IGEGALSIKVGSGTAFNIDVSATDSLTDIMNKINKSDDNTDVTATIVNGELGPQLVLGSK CCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCC KTGEDNQISVTATDSGAGTGLSDTFTMSEVTPAKNAIVYVDGVKVVSDSNTLDKAITGVS CCCCCCEEEEEEECCCCCCCCCCCEECCCCCCCCCEEEEEECEEEEECCCHHHHHHCCEE LTLTAADVDKTTTMTVSKDTAKTKTAIEGFVESYNSLMTTIQNLTKYDADTKQAGILQGD EEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCEECC ALPRSIQSQLRTMVSSEFDTSDGKQVLANLGIKTTREGLLEIDSTKLTESLKNDKGTISE CCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHCCCHHEEECHHHHHHHHCCCCCHHHH LFTSENTGLSAKMSGLVDTYIKSGGIIDGRDNSLDEQLARIADSREQLSTRMAAYSDRLY HHHCCCCCCCHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KQFNAMDLVVANLNSQSSMLLSRLDSLPGVVRQNK HHHCCCEEEEECCCCHHHHHHHHHHHCCCHHCCCC >Mature Secondary Structure GLTSVGIGSGMDIGGIVTALVNAESAGKIAKFDVNEGKLNAQISGIGALKSAMSEFNDK CCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEEHHHHHHHHHHHHHHH LKTLAKAETFGSQKVVTSSKDYLSATVDKTAVSGTYQIKVEQLAQSQKVGTAVATDTTSP HHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEECCCCCC IGEGALSIKVGSGTAFNIDVSATDSLTDIMNKINKSDDNTDVTATIVNGELGPQLVLGSK CCCCEEEEEECCCEEEEEEECCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEECCC KTGEDNQISVTATDSGAGTGLSDTFTMSEVTPAKNAIVYVDGVKVVSDSNTLDKAITGVS CCCCCCEEEEEEECCCCCCCCCCCEECCCCCCCCCEEEEEECEEEEECCCHHHHHHCCEE LTLTAADVDKTTTMTVSKDTAKTKTAIEGFVESYNSLMTTIQNLTKYDADTKQAGILQGD EEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCEECC ALPRSIQSQLRTMVSSEFDTSDGKQVLANLGIKTTREGLLEIDSTKLTESLKNDKGTISE CCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHCCCHHEEECHHHHHHHHCCCCCHHHH LFTSENTGLSAKMSGLVDTYIKSGGIIDGRDNSLDEQLARIADSREQLSTRMAAYSDRLY HHHCCCCCCCHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KQFNAMDLVVANLNSQSSMLLSRLDSLPGVVRQNK HHHCCCEEEEECCCCHHHHHHHHHHHCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9488388; 10678962 [H]