| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is hemH2 [H]
Identifier: 113969541
GI number: 113969541
Start: 1399974
End: 1400957
Strand: Direct
Name: hemH2 [H]
Synonym: Shewmr4_1197
Alternate gene names: 113969541
Gene position: 1399974-1400957 (Clockwise)
Preceding gene: 113969540
Following gene: 113969546
Centisome position: 29.75
GC content: 49.19
Gene sequence:
>984_bases ATGGGTCACGCAAAGCGTGGCAAAGTGGGTGTGTTGTTACTTAACCTTGGCACACCCGATGCGCCAACAGCATCGGCGGT GAGGCGTTACCTTTCCGAGTTTTTATCCGATCCTCGGGTGGTCGAAATTCCAAAACTCCTGTGGATGCTGATTTTACATG GCATAGTGCTGCGCGTTCGCCCTGCCAAGTCTGCGGCGCTCTATCAGAAGGTCTGGACTGAAGCGGGTTCACCACTGATG GATATCAGCTTGCGCCAAACCGCTAAGTTATCAGAAAAATTAACGGCCGATGGGCATCAAGTATCAGTACATTTAGCCAT GCGTTATGGCAATCCTTCTGTGGCGAGCACCTTACAAACGATGCATCAACAGGGGATTGATAAGCTGGTGGTGTTACCGC TCTATCCGCAATATGCAGCGCCGACAACCGGCTCGGCCTTCGATGCTATTGCAAGGGAATTAACCCAGTGGCGCTATCTA CCATCGCTGCATTTTATTCACACGTATCATGATAACCCCGACTTTATTACCGCATTGGTGAACTCAATTCGTGCCGACTT TGAGCAACAGGGTAAGCCGCAAAAGTTAGTGCTTTCTTACCATGGTATGCCGGAGCGTAATCTGCACTTAGGCGATCCTT ATTATTGCTTTTGCATGAAGACCACCCGTCTGGTGGCCGAGCAATTAGGGCTTACAGCGGATGAGTTTGTGATGACTTTC CAATCTCGCTTTGGTAAGGCTAAATGGTTACAACCTTATACGGATGCAACCATGCAGGCGTTACCAAGCGAAGGTGTACG TGACGTGGCGATTGTGTGCCCAGCGTTTAGTGCAGATTGCTTAGAGACCTTAGAAGAGATCGTGGGTGAGAATGGCCATA TCTTTGCTAATGCTGGCGGGGAGAAGTTCCGTTACATTCCGGCACTGAACGATAATGATGACCATATCAGCATGATGGCT AACTTGGTTAAACCTTACCTGTAA
Upstream 100 bases:
>100_bases GCTTAAGCAGGCAATAGAATCAGTGCTTTAATGCCCAATTTATTCATTTTACTCATGTTAAGAGGCTACTTTGGCTAGGT TTTCAGGATTATCAAAAGAG
Downstream 100 bases:
>100_bases GGTTTATAAGTGCAGAAATAAAAAAGGATAGCTTAGGCTATCCTTTTGTTTTTATGATTTATTATTCACCGAAATGATTT TCAAAATAGCTTTCGACAAT
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase 2; Protoheme ferro-lyase 2 [H]
Number of amino acids: Translated: 327; Mature: 326
Protein sequence:
>327_residues MGHAKRGKVGVLLLNLGTPDAPTASAVRRYLSEFLSDPRVVEIPKLLWMLILHGIVLRVRPAKSAALYQKVWTEAGSPLM DISLRQTAKLSEKLTADGHQVSVHLAMRYGNPSVASTLQTMHQQGIDKLVVLPLYPQYAAPTTGSAFDAIARELTQWRYL PSLHFIHTYHDNPDFITALVNSIRADFEQQGKPQKLVLSYHGMPERNLHLGDPYYCFCMKTTRLVAEQLGLTADEFVMTF QSRFGKAKWLQPYTDATMQALPSEGVRDVAIVCPAFSADCLETLEEIVGENGHIFANAGGEKFRYIPALNDNDDHISMMA NLVKPYL
Sequences:
>Translated_327_residues MGHAKRGKVGVLLLNLGTPDAPTASAVRRYLSEFLSDPRVVEIPKLLWMLILHGIVLRVRPAKSAALYQKVWTEAGSPLM DISLRQTAKLSEKLTADGHQVSVHLAMRYGNPSVASTLQTMHQQGIDKLVVLPLYPQYAAPTTGSAFDAIARELTQWRYL PSLHFIHTYHDNPDFITALVNSIRADFEQQGKPQKLVLSYHGMPERNLHLGDPYYCFCMKTTRLVAEQLGLTADEFVMTF QSRFGKAKWLQPYTDATMQALPSEGVRDVAIVCPAFSADCLETLEEIVGENGHIFANAGGEKFRYIPALNDNDDHISMMA NLVKPYL >Mature_326_residues GHAKRGKVGVLLLNLGTPDAPTASAVRRYLSEFLSDPRVVEIPKLLWMLILHGIVLRVRPAKSAALYQKVWTEAGSPLMD ISLRQTAKLSEKLTADGHQVSVHLAMRYGNPSVASTLQTMHQQGIDKLVVLPLYPQYAAPTTGSAFDAIARELTQWRYLP SLHFIHTYHDNPDFITALVNSIRADFEQQGKPQKLVLSYHGMPERNLHLGDPYYCFCMKTTRLVAEQLGLTADEFVMTFQ SRFGKAKWLQPYTDATMQALPSEGVRDVAIVCPAFSADCLETLEEIVGENGHIFANAGGEKFRYIPALNDNDDHISMMAN LVKPYL
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX [H]
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family [H]
Homologues:
Organism=Homo sapiens, GI60499021, Length=335, Percent_Identity=25.6716417910448, Blast_Score=102, Evalue=6e-22, Organism=Homo sapiens, GI60499025, Length=333, Percent_Identity=25.8258258258258, Blast_Score=102, Evalue=6e-22, Organism=Escherichia coli, GI1786681, Length=322, Percent_Identity=49.0683229813665, Blast_Score=319, Evalue=2e-88, Organism=Saccharomyces cerevisiae, GI6324750, Length=332, Percent_Identity=25, Blast_Score=96, Evalue=9e-21, Organism=Drosophila melanogaster, GI17864156, Length=342, Percent_Identity=25.7309941520468, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24651774, Length=273, Percent_Identity=25.2747252747253, Blast_Score=80, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001015 - InterPro: IPR019772 [H]
Pfam domain/function: PF00762 Ferrochelatase [H]
EC number: =4.99.1.1 [H]
Molecular weight: Translated: 36484; Mature: 36352
Theoretical pI: Translated: 7.39; Mature: 7.39
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGHAKRGKVGVLLLNLGTPDAPTASAVRRYLSEFLSDPRVVEIPKLLWMLILHGIVLRVR CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHEEEC PAKSAALYQKVWTEAGSPLMDISLRQTAKLSEKLTADGHQVSVHLAMRYGNPSVASTLQT CCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHH MHQQGIDKLVVLPLYPQYAAPTTGSAFDAIARELTQWRYLPSLHFIHTYHDNPDFITALV HHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHH NSIRADFEQQGKPQKLVLSYHGMPERNLHLGDPYYCFCMKTTRLVAEQLGLTADEFVMTF HHHHHHHHHCCCCCEEEEEECCCCCCCEECCCCEEEEEHHHHHHHHHHHCCCHHHHHHHH QSRFGKAKWLQPYTDATMQALPSEGVRDVAIVCPAFSADCLETLEEIVGENGHIFANAGG HHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCC EKFRYIPALNDNDDHISMMANLVKPYL CEEEEECCCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure GHAKRGKVGVLLLNLGTPDAPTASAVRRYLSEFLSDPRVVEIPKLLWMLILHGIVLRVR CCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHEEEC PAKSAALYQKVWTEAGSPLMDISLRQTAKLSEKLTADGHQVSVHLAMRYGNPSVASTLQT CCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHH MHQQGIDKLVVLPLYPQYAAPTTGSAFDAIARELTQWRYLPSLHFIHTYHDNPDFITALV HHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHH NSIRADFEQQGKPQKLVLSYHGMPERNLHLGDPYYCFCMKTTRLVAEQLGLTADEFVMTF HHHHHHHHHCCCCCEEEEEECCCCCCCEECCCCEEEEEHHHHHHHHHHHCCCHHHHHHHH QSRFGKAKWLQPYTDATMQALPSEGVRDVAIVCPAFSADCLETLEEIVGENGHIFANAGG HHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCC EKFRYIPALNDNDDHISMMANLVKPYL CEEEEECCCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]