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The map label for this gene is yddU [C]

Identifier: 113969421

GI number: 113969421

Start: 1261751

End: 1264048

Strand: Direct

Name: yddU [C]

Synonym: Shewmr4_1077

Alternate gene names: 113969421

Gene position: 1261751-1264048 (Clockwise)

Preceding gene: 113969420

Following gene: 113969422

Centisome position: 26.81

GC content: 48.48

Gene sequence:

>2298_bases
ATGCTAAATAGTTTCCGTGCTCGACTGATTTTAGTTTTCTTTACTGTGCTGACCCTAGTGCAGTTAGCCACGGCATTTTC
AGTGTTGACGGCAACACAGAGAGATAACTTTTTACAGCAACAAAAGAGCCTTGAAATCGGCGCGAATGTGTTTCTCGAAG
TGTTGTCGAATCGCGGTGCTCAACTCAGTCAAAGCTTATCTGTGCTCAGCGCCGATTTTGGTTTTAAGCGCGCGATTGCG
ACCAGAGAGCAAGAAACGATAGCGTCGGTATTATCCAATCATGGTGCCCGTATCGGTGCAGATGCAGCCATATTGTTGTC
ACCCAAGGGGGAACTGTTAACCTCAAGCCTGCCAGGGCTTACGCAGGATGATATTCAATCCCTATTTGAACTGGCCACCA
GCAATACCAATGCCTTGGCGATTCTCGATTTTGACCATGCGAGTTATCAGTTTGTCCTTCAACCAGTCAAGGCGCCAACT
CTGATAGCCTGGGTTGGTATGGGCTTTTTGTTAGATGAAAAAGTGGCTAGCCAAGCCAAAGCCATCACAGGGATTGATGT
TAGCTTTGTTAATCAGACCAATGGCAGGACTGAAATCGCCTCCACCTTATCCAGCGCCGAACAGCAGAGTGTGCTTGCGC
AGAAAAACCGCTTCCCCAGCCTGTTAACTATGCCCAGCGAGTATATTCCTGCGGACTACTTATCCATGGCAATCAAGCTA
TATGAGCATAATGGTCGCCAGTTGGCGCTGCTGCACCAGTCAAACCTCAAGTGGCAGCAAAGTTATCTGCATTTACGCAA
TAACATGCTGCTGATCTTTGCGTTGACGCTGGCATTGGCGATTGCCATTGCCATTTGGTTGTCGGGCAGTTTGACTGAGC
CCGTTCATCGATTGGTGCAGTATGCCCGTAAAATTGGTCAGGGACTGCAGCCTGAGAGCATTCAGGGGGCGCCTGCGGAA
TTGCGGGTATTGGCCAACAGTTTGTCTTTGATGCGGGAGGATATTGAGGCGCGCGAAAAGGATTTGCTGTATCAGTCGCG
CCACGACAGTTTGACAGGCTTGCTGAATCGTTTCGCGGCAAAACAGCATTTAACCGATCTTAACCAAGATCTCTCTGGCA
CTATCGTATTGCTGGATATCAAGCATTTTCGCCATATCAACGACATTATCGGTTTTGCTAACGCCGATAGCTTATTGCTG
CTGTTTGCCCGCCGTTTGGAACAGCTGGCGCCCACAGCCGATATGCTGGCACGATTGGATGGTGATTCGTTTTTGCTCTT
GTATCGCCAAGGAATTGGGGGCGATCAATTACTGAAATTCTTGGATATGCTAGAAGCTCCCTTTCCTATCCAAGGTTCCA
ATATTTCGCTGACGGTGCGAGCAGGGCTGCTCGAAATTGATGCCAATGGTGCCGACATTGATGTGTTGCTGCGCCGCGCC
GAAATTGCCCTCAACCAGGCCTGCCTTCAGGAACTGCGAATCGTTAGTTATCGTGAGGGCGACGATGAAAAGTACCAGCG
AGAACTCACACTTATCCGTGATTTGCCTATTGGTTTGGCGCAGGACCAGCTCTATTTGGTGTTTCAGCCCAAGGTTAATT
TGCCGCTCAATCAATGTACTGGTGCCGAAGCACTTATCCGTTGGCAACATCCTACTCTGGGTTTTATCCCGCCGGATGAG
TTTATTCAACTCGCTGAAAACTCTGGCAACATTGATATTGTCAGCCAATGGGTATTGAAGCAGGCCATCAAACAGTTGGT
GACATGGCAGCAGCAGGGCCTAGCGCTGAAGTTGGCGATTAACCTGTCTGCCCACGATTTACTGGATACTCGTTTACCAA
ATCAAATTGCCAACTTGTTAAAGGACAATCATCTGCAACCCGGTGCACTCTGCATCGAGGTCACCGAAGGCGCCGTGATG
AAAGATGCGCAAACCGTTGTGGGGGTCTTGCAACGATTCCGCGATATGGGGGTCTCGGTTGCGATTGATGATTTTGGCAC
CGGACATTCATCACTGGCGTATTTGAAATTATTACCCGTTGATGAAGTGAAGATTGATCGTAGCTTTATCCAGAATATGC
ACTTGAACAGTCAGGATGCCATGATAGTCAATACCAGCATTCAATTGATCCATGGCCTCGGTTTTAGCGTTGTGGCTGAA
GGTGTTGAAGAGCGAGAAGGTGTTGATATTCTTCGTCATCTCAACTGCGATCTGATCCAGGGCTATGTGTATTCCAAGCC
GTTAAAAGCGGCTGAGTTTGACCAGTGGTTTGAAGCATTTAATAGTAGCAGCAAATAA

Upstream 100 bases:

>100_bases
GACCTCAATTTGGCTGCCGAGACTCAAACACTCACGCTGGCATTGGATGTCGAGCGTCAGGCAAAACCTTCGGCTCCGCC
ATCGGGGTTTGGATCCTTCG

Downstream 100 bases:

>100_bases
GAAAACGCCGACTGGCGTCATCATCGCCCTCTAATGCAAGCAATCGCGTATTGAGTGAGTATGTCCATGAACACAATGAA
GTTGAGCTTATCGACTCGGC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 765; Mature: 765

Protein sequence:

>765_residues
MLNSFRARLILVFFTVLTLVQLATAFSVLTATQRDNFLQQQKSLEIGANVFLEVLSNRGAQLSQSLSVLSADFGFKRAIA
TREQETIASVLSNHGARIGADAAILLSPKGELLTSSLPGLTQDDIQSLFELATSNTNALAILDFDHASYQFVLQPVKAPT
LIAWVGMGFLLDEKVASQAKAITGIDVSFVNQTNGRTEIASTLSSAEQQSVLAQKNRFPSLLTMPSEYIPADYLSMAIKL
YEHNGRQLALLHQSNLKWQQSYLHLRNNMLLIFALTLALAIAIAIWLSGSLTEPVHRLVQYARKIGQGLQPESIQGAPAE
LRVLANSLSLMREDIEAREKDLLYQSRHDSLTGLLNRFAAKQHLTDLNQDLSGTIVLLDIKHFRHINDIIGFANADSLLL
LFARRLEQLAPTADMLARLDGDSFLLLYRQGIGGDQLLKFLDMLEAPFPIQGSNISLTVRAGLLEIDANGADIDVLLRRA
EIALNQACLQELRIVSYREGDDEKYQRELTLIRDLPIGLAQDQLYLVFQPKVNLPLNQCTGAEALIRWQHPTLGFIPPDE
FIQLAENSGNIDIVSQWVLKQAIKQLVTWQQQGLALKLAINLSAHDLLDTRLPNQIANLLKDNHLQPGALCIEVTEGAVM
KDAQTVVGVLQRFRDMGVSVAIDDFGTGHSSLAYLKLLPVDEVKIDRSFIQNMHLNSQDAMIVNTSIQLIHGLGFSVVAE
GVEEREGVDILRHLNCDLIQGYVYSKPLKAAEFDQWFEAFNSSSK

Sequences:

>Translated_765_residues
MLNSFRARLILVFFTVLTLVQLATAFSVLTATQRDNFLQQQKSLEIGANVFLEVLSNRGAQLSQSLSVLSADFGFKRAIA
TREQETIASVLSNHGARIGADAAILLSPKGELLTSSLPGLTQDDIQSLFELATSNTNALAILDFDHASYQFVLQPVKAPT
LIAWVGMGFLLDEKVASQAKAITGIDVSFVNQTNGRTEIASTLSSAEQQSVLAQKNRFPSLLTMPSEYIPADYLSMAIKL
YEHNGRQLALLHQSNLKWQQSYLHLRNNMLLIFALTLALAIAIAIWLSGSLTEPVHRLVQYARKIGQGLQPESIQGAPAE
LRVLANSLSLMREDIEAREKDLLYQSRHDSLTGLLNRFAAKQHLTDLNQDLSGTIVLLDIKHFRHINDIIGFANADSLLL
LFARRLEQLAPTADMLARLDGDSFLLLYRQGIGGDQLLKFLDMLEAPFPIQGSNISLTVRAGLLEIDANGADIDVLLRRA
EIALNQACLQELRIVSYREGDDEKYQRELTLIRDLPIGLAQDQLYLVFQPKVNLPLNQCTGAEALIRWQHPTLGFIPPDE
FIQLAENSGNIDIVSQWVLKQAIKQLVTWQQQGLALKLAINLSAHDLLDTRLPNQIANLLKDNHLQPGALCIEVTEGAVM
KDAQTVVGVLQRFRDMGVSVAIDDFGTGHSSLAYLKLLPVDEVKIDRSFIQNMHLNSQDAMIVNTSIQLIHGLGFSVVAE
GVEEREGVDILRHLNCDLIQGYVYSKPLKAAEFDQWFEAFNSSSK
>Mature_765_residues
MLNSFRARLILVFFTVLTLVQLATAFSVLTATQRDNFLQQQKSLEIGANVFLEVLSNRGAQLSQSLSVLSADFGFKRAIA
TREQETIASVLSNHGARIGADAAILLSPKGELLTSSLPGLTQDDIQSLFELATSNTNALAILDFDHASYQFVLQPVKAPT
LIAWVGMGFLLDEKVASQAKAITGIDVSFVNQTNGRTEIASTLSSAEQQSVLAQKNRFPSLLTMPSEYIPADYLSMAIKL
YEHNGRQLALLHQSNLKWQQSYLHLRNNMLLIFALTLALAIAIAIWLSGSLTEPVHRLVQYARKIGQGLQPESIQGAPAE
LRVLANSLSLMREDIEAREKDLLYQSRHDSLTGLLNRFAAKQHLTDLNQDLSGTIVLLDIKHFRHINDIIGFANADSLLL
LFARRLEQLAPTADMLARLDGDSFLLLYRQGIGGDQLLKFLDMLEAPFPIQGSNISLTVRAGLLEIDANGADIDVLLRRA
EIALNQACLQELRIVSYREGDDEKYQRELTLIRDLPIGLAQDQLYLVFQPKVNLPLNQCTGAEALIRWQHPTLGFIPPDE
FIQLAENSGNIDIVSQWVLKQAIKQLVTWQQQGLALKLAINLSAHDLLDTRLPNQIANLLKDNHLQPGALCIEVTEGAVM
KDAQTVVGVLQRFRDMGVSVAIDDFGTGHSSLAYLKLLPVDEVKIDRSFIQNMHLNSQDAMIVNTSIQLIHGLGFSVVAE
GVEEREGVDILRHLNCDLIQGYVYSKPLKAAEFDQWFEAFNSSSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=422, Percent_Identity=31.7535545023697, Blast_Score=209, Evalue=7e-55,
Organism=Escherichia coli, GI1787541, Length=426, Percent_Identity=28.6384976525822, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI1790496, Length=253, Percent_Identity=35.5731225296443, Blast_Score=154, Evalue=2e-38,
Organism=Escherichia coli, GI226510982, Length=258, Percent_Identity=32.5581395348837, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI1786507, Length=263, Percent_Identity=31.5589353612167, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1788502, Length=250, Percent_Identity=31.6, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI87081743, Length=231, Percent_Identity=31.1688311688312, Blast_Score=128, Evalue=2e-30,
Organism=Escherichia coli, GI1787055, Length=450, Percent_Identity=24.4444444444444, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=30.6772908366534, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI87081845, Length=222, Percent_Identity=32.8828828828829, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=246, Percent_Identity=31.7073170731707, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI87082096, Length=293, Percent_Identity=27.9863481228669, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081881, Length=208, Percent_Identity=30.2884615384615, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 84753; Mature: 84753

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNSFRARLILVFFTVLTLVQLATAFSVLTATQRDNFLQQQKSLEIGANVFLEVLSNRGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
QLSQSLSVLSADFGFKRAIATREQETIASVLSNHGARIGADAAILLSPKGELLTSSLPGL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCCHHHCCCCCC
TQDDIQSLFELATSNTNALAILDFDHASYQFVLQPVKAPTLIAWVGMGFLLDEKVASQAK
CHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
AITGIDVSFVNQTNGRTEIASTLSSAEQQSVLAQKNRFPSLLTMPSEYIPADYLSMAIKL
HHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHH
YEHNGRQLALLHQSNLKWQQSYLHLRNNMLLIFALTLALAIAIAIWLSGSLTEPVHRLVQ
HCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
YARKIGQGLQPESIQGAPAELRVLANSLSLMREDIEAREKDLLYQSRHDSLTGLLNRFAA
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KQHLTDLNQDLSGTIVLLDIKHFRHINDIIGFANADSLLLLFARRLEQLAPTADMLARLD
HHHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHCC
GDSFLLLYRQGIGGDQLLKFLDMLEAPFPIQGSNISLTVRAGLLEIDANGADIDVLLRRA
CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHH
EIALNQACLQELRIVSYREGDDEKYQRELTLIRDLPIGLAQDQLYLVFQPKVNLPLNQCT
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHCC
GAEALIRWQHPTLGFIPPDEFIQLAENSGNIDIVSQWVLKQAIKQLVTWQQQGLALKLAI
CCHHEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
NLSAHDLLDTRLPNQIANLLKDNHLQPGALCIEVTEGAVMKDAQTVVGVLQRFRDMGVSV
ECCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEE
AIDDFGTGHSSLAYLKLLPVDEVKIDRSFIQNMHLNSQDAMIVNTSIQLIHGLGFSVVAE
EEECCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCHHHHHH
GVEEREGVDILRHLNCDLIQGYVYSKPLKAAEFDQWFEAFNSSSK
HHHHHCCHHHHHHCCHHHHHCHHHCCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLNSFRARLILVFFTVLTLVQLATAFSVLTATQRDNFLQQQKSLEIGANVFLEVLSNRGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
QLSQSLSVLSADFGFKRAIATREQETIASVLSNHGARIGADAAILLSPKGELLTSSLPGL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCCCCHHHCCCCCC
TQDDIQSLFELATSNTNALAILDFDHASYQFVLQPVKAPTLIAWVGMGFLLDEKVASQAK
CHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
AITGIDVSFVNQTNGRTEIASTLSSAEQQSVLAQKNRFPSLLTMPSEYIPADYLSMAIKL
HHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHH
YEHNGRQLALLHQSNLKWQQSYLHLRNNMLLIFALTLALAIAIAIWLSGSLTEPVHRLVQ
HCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
YARKIGQGLQPESIQGAPAELRVLANSLSLMREDIEAREKDLLYQSRHDSLTGLLNRFAA
HHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KQHLTDLNQDLSGTIVLLDIKHFRHINDIIGFANADSLLLLFARRLEQLAPTADMLARLD
HHHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHCC
GDSFLLLYRQGIGGDQLLKFLDMLEAPFPIQGSNISLTVRAGLLEIDANGADIDVLLRRA
CCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHH
EIALNQACLQELRIVSYREGDDEKYQRELTLIRDLPIGLAQDQLYLVFQPKVNLPLNQCT
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHCC
GAEALIRWQHPTLGFIPPDEFIQLAENSGNIDIVSQWVLKQAIKQLVTWQQQGLALKLAI
CCHHEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
NLSAHDLLDTRLPNQIANLLKDNHLQPGALCIEVTEGAVMKDAQTVVGVLQRFRDMGVSV
ECCHHHHHHHCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEE
AIDDFGTGHSSLAYLKLLPVDEVKIDRSFIQNMHLNSQDAMIVNTSIQLIHGLGFSVVAE
EEECCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECHHHHHHCCCHHHHHH
GVEEREGVDILRHLNCDLIQGYVYSKPLKAAEFDQWFEAFNSSSK
HHHHHCCHHHHHHCCHHHHHCHHHCCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]