| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113969419
Identifier: 113969419
GI number: 113969419
Start: 1259567
End: 1260844
Strand: Direct
Name: 113969419
Synonym: Shewmr4_1075
Alternate gene names: NA
Gene position: 1259567-1260844 (Clockwise)
Preceding gene: 113969418
Following gene: 113969420
Centisome position: 26.76
GC content: 47.89
Gene sequence:
>1278_bases ATGAATGCTTTTCAGCCTCAGGAAATCAGTATCAAAATTGATGTTCGGCATGCGTTGTTAGCCGTGGCGACGGCATTGGA TTTTGTCGGCGTGGATGATTTACACCACGGTCATCGAGTGGCCTATATGGCCTATGAATGCGCCAATGTGTTGGGTTGGT CAGATGAAAAGAAGCAGTTTGCCTATTTTGCGGGGCTTATCCATGACTGTGGCGTGTCTTCCTCCGAGGAGCATTTACGC CTACTCAAATTAATGCAGCCAGAAGATGCCACCTCCCACAGCCGCCGTGGGTATGAGGCCTTAATGAAATGCCCCATACT TGACCGTTTCGCCTTAATCGTACTGTATCACCACACTCCTTGGCTTGAGCTGCAAACCCTGCATATTCCTGAGTTTGATC GTGATCTTGCTGCATTGGTGTTTCTGGCCGATCGGACCGATTTTCTGCGGGCGCGCTATACCCATGGTTGTCACCAAGAG CTAATTACCCTCCATGAAGGGTTGGTTGCGGATAATTTGCTAGCCCACAGTGGCGTGTTGTTCGAGCCTAATATGGTGGC GGCCATGTGCCAATTAGTCAGTAAAGACGGCTTTTGGTACAACATGGAGGCTGTCCATATCGAGCAAATGGCCCTCGAGT TTGAAGCGAATCAACTGTACGACAAACAGCTTGATCTCGAAGGCGTTAAGCAGATATCAAGATTTTTGGCACGGATTGTC GATGCCAAGAGTCCCTTTACTTTTCATCATTCGGACAAGGTTGCACTGCTGGCAAAACTGGTCGCTAAGGATTGTGGCAT ATCGGATACCGATGCCGAGTTATTGTATGTGGCTGGGCTGTTACACGATGTTGGCAAGCTCAAAACCCCCGATTTATTAC TCCATAAGGAAGGCAAGCTGACCAAGGAGGAATACTCAATTATGAAGCGCCACACAGTCGATACCGACCACACCTTAAAG AGCTTTTTTCCTAAGTCTGTTATTGGTGAGTGGGCGTCAAACCACCATGAGCGTCTCGATGGCTCGGGTTATCCCTTTAG AAAAAGACAAGAACAGTTAGATTTACCTTCGCGGATCCTTGCACTCGTCGATGTGTTTCAAGCCTTAACCCAAAAGCGAC CCTACCGTGGCTCCCTGTCCTTAAGTGAGGTGCTGGACATTATGTTGCCAATGGTTCAACAGGGTAAGTTGGACTCGAAC GTTTATGATGTATTGCTAGCCGATGCCGATAATTTTTATCAACTCTCGACGCAAGAGTATGAGGACATCAAGTTATAA
Upstream 100 bases:
>100_bases TAAAAAGACCTGCAAATGCAGGTCTTTTTTTTCGGCTTTAGCGGCTAAATATAACTGATCTAACTATAGTTAGATCAGTG CGTTAAATTAGGTAAATACG
Downstream 100 bases:
>100_bases AGCTGAGCAAATGGTGACTCTAAATTAGTCACTGTCGGTGCTTTAGCACTATTTAAGTGTGGTGTTTTCATCTTTCTGCT GCCCGTTAGCACAACGGCCG
Product: metal dependent phosphohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 425; Mature: 425
Protein sequence:
>425_residues MNAFQPQEISIKIDVRHALLAVATALDFVGVDDLHHGHRVAYMAYECANVLGWSDEKKQFAYFAGLIHDCGVSSSEEHLR LLKLMQPEDATSHSRRGYEALMKCPILDRFALIVLYHHTPWLELQTLHIPEFDRDLAALVFLADRTDFLRARYTHGCHQE LITLHEGLVADNLLAHSGVLFEPNMVAAMCQLVSKDGFWYNMEAVHIEQMALEFEANQLYDKQLDLEGVKQISRFLARIV DAKSPFTFHHSDKVALLAKLVAKDCGISDTDAELLYVAGLLHDVGKLKTPDLLLHKEGKLTKEEYSIMKRHTVDTDHTLK SFFPKSVIGEWASNHHERLDGSGYPFRKRQEQLDLPSRILALVDVFQALTQKRPYRGSLSLSEVLDIMLPMVQQGKLDSN VYDVLLADADNFYQLSTQEYEDIKL
Sequences:
>Translated_425_residues MNAFQPQEISIKIDVRHALLAVATALDFVGVDDLHHGHRVAYMAYECANVLGWSDEKKQFAYFAGLIHDCGVSSSEEHLR LLKLMQPEDATSHSRRGYEALMKCPILDRFALIVLYHHTPWLELQTLHIPEFDRDLAALVFLADRTDFLRARYTHGCHQE LITLHEGLVADNLLAHSGVLFEPNMVAAMCQLVSKDGFWYNMEAVHIEQMALEFEANQLYDKQLDLEGVKQISRFLARIV DAKSPFTFHHSDKVALLAKLVAKDCGISDTDAELLYVAGLLHDVGKLKTPDLLLHKEGKLTKEEYSIMKRHTVDTDHTLK SFFPKSVIGEWASNHHERLDGSGYPFRKRQEQLDLPSRILALVDVFQALTQKRPYRGSLSLSEVLDIMLPMVQQGKLDSN VYDVLLADADNFYQLSTQEYEDIKL >Mature_425_residues MNAFQPQEISIKIDVRHALLAVATALDFVGVDDLHHGHRVAYMAYECANVLGWSDEKKQFAYFAGLIHDCGVSSSEEHLR LLKLMQPEDATSHSRRGYEALMKCPILDRFALIVLYHHTPWLELQTLHIPEFDRDLAALVFLADRTDFLRARYTHGCHQE LITLHEGLVADNLLAHSGVLFEPNMVAAMCQLVSKDGFWYNMEAVHIEQMALEFEANQLYDKQLDLEGVKQISRFLARIV DAKSPFTFHHSDKVALLAKLVAKDCGISDTDAELLYVAGLLHDVGKLKTPDLLLHKEGKLTKEEYSIMKRHTVDTDHTLK SFFPKSVIGEWASNHHERLDGSGYPFRKRQEQLDLPSRILALVDVFQALTQKRPYRGSLSLSEVLDIMLPMVQQGKLDSN VYDVLLADADNFYQLSTQEYEDIKL
Specific function: Unknown
COG id: COG2206
COG function: function code T; HD-GYP domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR003607 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48400; Mature: 48400
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAFQPQEISIKIDVRHALLAVATALDFVGVDDLHHGHRVAYMAYECANVLGWSDEKKQF CCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH AYFAGLIHDCGVSSSEEHLRLLKLMQPEDATSHSRRGYEALMKCPILDRFALIVLYHHTP HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHEEECCC WLELQTLHIPEFDRDLAALVFLADRTDFLRARYTHGCHQELITLHEGLVADNLLAHSGVL CEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCE FEPNMVAAMCQLVSKDGFWYNMEAVHIEQMALEFEANQLYDKQLDLEGVKQISRFLARIV ECCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH DAKSPFTFHHSDKVALLAKLVAKDCGISDTDAELLYVAGLLHDVGKLKTPDLLLHKEGKL CCCCCCEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCC TKEEYSIMKRHTVDTDHTLKSFFPKSVIGEWASNHHERLDGSGYPFRKRQEQLDLPSRIL CHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHH ALVDVFQALTQKRPYRGSLSLSEVLDIMLPMVQQGKLDSNVYDVLLADADNFYQLSTQEY HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHEEEEECCCCCEEECCCCC EDIKL CCCCC >Mature Secondary Structure MNAFQPQEISIKIDVRHALLAVATALDFVGVDDLHHGHRVAYMAYECANVLGWSDEKKQF CCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHH AYFAGLIHDCGVSSSEEHLRLLKLMQPEDATSHSRRGYEALMKCPILDRFALIVLYHHTP HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHEEECCC WLELQTLHIPEFDRDLAALVFLADRTDFLRARYTHGCHQELITLHEGLVADNLLAHSGVL CEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCE FEPNMVAAMCQLVSKDGFWYNMEAVHIEQMALEFEANQLYDKQLDLEGVKQISRFLARIV ECCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH DAKSPFTFHHSDKVALLAKLVAKDCGISDTDAELLYVAGLLHDVGKLKTPDLLLHKEGKL CCCCCCEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCC TKEEYSIMKRHTVDTDHTLKSFFPKSVIGEWASNHHERLDGSGYPFRKRQEQLDLPSRIL CHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHH ALVDVFQALTQKRPYRGSLSLSEVLDIMLPMVQQGKLDSNVYDVLLADADNFYQLSTQEY HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHEEEEECCCCCEEECCCCC EDIKL CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]